RNA–Protein interactions for RNA: ENST00000534320.5

PHRF1-206, Transcript of PHD and ring finger domains 1, humanhuman

TSL 5

Gene PHRF1, Length 5,178 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-206ENST00000534320 NISCHQ9Y2I1 1504 aa31.11■■■□□ 2.57
PHRF1-206ENST00000534320 DCAF8L2P0C7V8 631 aa30.31■■■□□ 2.44
PHRF1-206ENST00000534320 SUPT5HO00267 1087 aaKnown RBP29.03■■■□□ 2.24
PHRF1-206ENST00000534320 SHROOM4Q9ULL8 1493 aa28.9■■■□□ 2.22
PHRF1-206ENST00000534320 EHMT2Q96KQ7 1210 aa27.59■■■□□ 2.01
PHRF1-206ENST00000534320 PELP1Q8IZL8 1130 aaKnown RBP27.26■■□□□ 1.95
PHRF1-206ENST00000534320 FAM9AQ8IZU1 332 aaPredicted RBP27.21■■□□□ 1.95
PHRF1-206ENST00000534320 TRIM41Q8WV44 630 aa26.99■■□□□ 1.91
PHRF1-206ENST00000534320 APLP2Q06481 763 aa26.93■■□□□ 1.9
PHRF1-206ENST00000534320 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
PHRF1-206ENST00000534320 MYT1Q01538 1121 aa26.69■■□□□ 1.86
PHRF1-206ENST00000534320 TTBK1Q5TCY1 1321 aaPredicted RBP26.63■■□□□ 1.85
PHRF1-206ENST00000534320 RANGAP1P46060 587 aaPredicted RBP26.46■■□□□ 1.83
PHRF1-206ENST00000534320 UBTFP17480 764 aaKnown RBP26.41■■□□□ 1.82
PHRF1-206ENST00000534320 CHIC1Q5VXU3 224 aa26.38■■□□□ 1.81
PHRF1-206ENST00000534320 ABCC9O60706 1549 aa26.28■■□□□ 1.8
PHRF1-206ENST00000534320 ZEB1P37275 1124 aaPredicted RBP26.26■■□□□ 1.79
PHRF1-206ENST00000534320 CCER1Q8TC90 406 aaPredicted RBP26.18■■□□□ 1.78
PHRF1-206ENST00000534320 LOC105371045A0A1W2PR82 267 aa26.1■■□□□ 1.77
PHRF1-206ENST00000534320 ERICH6Q7L0X2 663 aa26.07■■□□□ 1.76
PHRF1-206ENST00000534320 ATP1B4Q9UN42 357 aaPredicted RBP26.07■■□□□ 1.76
PHRF1-206ENST00000534320 TRIM26Q12899 539 aaPredicted RBP26.01■■□□□ 1.75
PHRF1-206ENST00000534320 PPARGC1BQ86YN6 1023 aaKnown RBP26■■□□□ 1.75
PHRF1-206ENST00000534320 CENPBP07199 599 aaPredicted RBP25.95■■□□□ 1.74
PHRF1-206ENST00000534320 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
PHRF1-206ENST00000534320 PABPN1Q86U42 306 aaKnown RBP eCLIP25.85■■□□□ 1.73
PHRF1-206ENST00000534320 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
PHRF1-206ENST00000534320 HRCP23327 699 aa25.71■■□□□ 1.71
PHRF1-206ENST00000534320 SCRIBQ14160 1630 aa25.48■■□□□ 1.67
PHRF1-206ENST00000534320 ITGAEP38570 1179 aa25.38■■□□□ 1.65
PHRF1-206ENST00000534320 HNRNPUL2Q1KMD3 747 aaKnown RBP25.38■■□□□ 1.65
PHRF1-206ENST00000534320 YTHDC1Q96MU7 727 aaKnown RBP25.25■■□□□ 1.63
PHRF1-206ENST00000534320 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.23■■□□□ 1.63
PHRF1-206ENST00000534320 NEFLP07196 543 aa25.17■■□□□ 1.62
PHRF1-206ENST00000534320 CSRNP3Q8WYN3 585 aa25.04■■□□□ 1.6
PHRF1-206ENST00000534320 FAM50AQ14320 339 aaKnown RBP24.9■■□□□ 1.58
PHRF1-206ENST00000534320 RB1CC1Q8TDY2 1594 aa24.9■■□□□ 1.58
PHRF1-206ENST00000534320 RSF1Q96T23 1441 aaPredicted RBP24.82■■□□□ 1.56
PHRF1-206ENST00000534320 NACADO15069 1562 aa24.82■■□□□ 1.56
PHRF1-206ENST00000534320 MYT1LQ9UL68 1186 aa24.81■■□□□ 1.56
PHRF1-206ENST00000534320 DIEXFQ68CQ4 756 aaKnown RBP24.78■■□□□ 1.56
PHRF1-206ENST00000534320 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
PHRF1-206ENST00000534320 POLR3GLQ9BT43 218 aa24.7■■□□□ 1.55
PHRF1-206ENST00000534320 P3H3Q8IVL6 736 aa24.62■■□□□ 1.53
PHRF1-206ENST00000534320 TRIM52Q96A61 297 aa24.6■■□□□ 1.53
PHRF1-206ENST00000534320 DAXXQ9UER7 740 aaPredicted RBP24.58■■□□□ 1.53
PHRF1-206ENST00000534320 NEUROD1Q13562 356 aa24.57■■□□□ 1.52
PHRF1-206ENST00000534320 MYO15BQ96JP2 1530 aa24.57■■□□□ 1.52
PHRF1-206ENST00000534320 FBLN2P98095 1184 aa24.57■■□□□ 1.52
PHRF1-206ENST00000534320 CNGB1Q14028 1251 aaPredicted RBP24.46■■□□□ 1.51
PHRF1-206ENST00000534320 ZNF316A6NFI3 1004 aaPredicted RBP24.41■■□□□ 1.5
PHRF1-206ENST00000534320 CECR2Q9BXF3 1484 aa24.37■■□□□ 1.49
PHRF1-206ENST00000534320 RTL5Q5HYW3 569 aaPredicted RBP24.37■■□□□ 1.49
PHRF1-206ENST00000534320 ARID3CA6NKF2 412 aa24.36■■□□□ 1.49
PHRF1-206ENST00000534320 BAZ1AQ9NRL2 1556 aaPredicted RBP24.36■■□□□ 1.49
PHRF1-206ENST00000534320 BAZ1BQ9UIG0 1483 aaKnown RBP24.31■■□□□ 1.48
PHRF1-206ENST00000534320 EEA1Q15075 1411 aa24.3■■□□□ 1.48
PHRF1-206ENST00000534320 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.48
PHRF1-206ENST00000534320 CLIP1P30622 1438 aa24.24■■□□□ 1.47
PHRF1-206ENST00000534320 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
PHRF1-206ENST00000534320 GOLGA3Q08378 1498 aa24.19■■□□□ 1.46
PHRF1-206ENST00000534320 ZNF326Q5BKZ1 582 aaKnown RBP24.19■■□□□ 1.46
PHRF1-206ENST00000534320 ANP32CO43423 234 aa24.17■■□□□ 1.46
PHRF1-206ENST00000534320 CEP162Q5TB80 1403 aa24.16■■□□□ 1.46
PHRF1-206ENST00000534320 ZNF777Q9ULD5 760 aaPredicted RBP24.13■■□□□ 1.45
PHRF1-206ENST00000534320 SLC4A1APQ9BWU0 796 aaKnown RBP24.11■■□□□ 1.45
PHRF1-206ENST00000534320 MROH2BQ7Z745 1585 aa24.11■■□□□ 1.45
PHRF1-206ENST00000534320 GTF3C3Q9Y5Q9 886 aa24.06■■□□□ 1.44
PHRF1-206ENST00000534320 TNIKQ9UKE5 1360 aa24.05■■□□□ 1.44
PHRF1-206ENST00000534320 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
PHRF1-206ENST00000534320 KIF27Q86VH2 1401 aa23.99■■□□□ 1.43
PHRF1-206ENST00000534320 TONSLQ96HA7 1378 aa23.95■■□□□ 1.42
PHRF1-206ENST00000534320 MTUS2Q5JR59 1369 aa23.94■■□□□ 1.42
PHRF1-206ENST00000534320 ACIN1Q9UKV3 1341 aaKnown RBP23.92■■□□□ 1.42
PHRF1-206ENST00000534320 CCDC88BA6NC98 1476 aa23.92■■□□□ 1.42
PHRF1-206ENST00000534320 CHIC2Q9UKJ5 165 aa23.88■■□□□ 1.41
PHRF1-206ENST00000534320 SOGA1O94964 1423 aa23.86■■□□□ 1.41
PHRF1-206ENST00000534320 CHMP7Q8WUX9 453 aaPredicted RBP23.86■■□□□ 1.41
PHRF1-206ENST00000534320 BCANQ96GW7 911 aa23.83■■□□□ 1.41
PHRF1-206ENST00000534320 WIZO95785 1651 aa23.78■■□□□ 1.4
PHRF1-206ENST00000534320 ABCC8Q09428 1581 aa23.77■■□□□ 1.4
PHRF1-206ENST00000534320 SMARCA2P51531 1590 aa23.76■■□□□ 1.39
PHRF1-206ENST00000534320 TOP2AP11388 1531 aaKnown RBP23.73■■□□□ 1.39
PHRF1-206ENST00000534320 DDX10Q13206 875 aaKnown RBP23.72■■□□□ 1.39
PHRF1-206ENST00000534320 TSPY4P0CV99 314 aa23.66■■□□□ 1.38
PHRF1-206ENST00000534320 TSPY10P0CW01 314 aa23.66■■□□□ 1.38
PHRF1-206ENST00000534320 CUX2O14529 1486 aa23.64■■□□□ 1.37
PHRF1-206ENST00000534320 CLSPNQ9HAW4 1339 aa23.63■■□□□ 1.37
PHRF1-206ENST00000534320 NPM1P06748 294 aaKnown RBP eCLIP23.62■■□□□ 1.37
PHRF1-206ENST00000534320 RRP7BPQ9NSQ0 103 aa23.62■■□□□ 1.37
PHRF1-206ENST00000534320 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
PHRF1-206ENST00000534320 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.56■■□□□ 1.366e-8■■■□□ 15.2
PHRF1-206ENST00000534320 GLIPR1L2Q4G1C9 344 aa23.56■■□□□ 1.36
PHRF1-206ENST00000534320 SMARCA4P51532 1647 aa23.54■■□□□ 1.36
PHRF1-206ENST00000534320 MIER1Q8N108 512 aa23.53■■□□□ 1.36
PHRF1-206ENST00000534320 PLEKHD1A6NEE1 506 aa23.52■■□□□ 1.36
PHRF1-206ENST00000534320 EIF5BO60841 1220 aaKnown RBP23.51■■□□□ 1.35
PHRF1-206ENST00000534320 FHAD1B1AJZ9 1412 aa23.51■■□□□ 1.35
PHRF1-206ENST00000534320 VPS8Q8N3P4 1428 aa23.5■■□□□ 1.35
PHRF1-206ENST00000534320 CHGAP10645 457 aaKnown RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms