RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 DCAF8L2P0C7V8 631 aa20.36■□□□□ 0.85
TTC28-201ENST00000397906 SUPT5HO00267 1087 aaKnown RBP18.91■□□□□ 0.62
TTC28-201ENST00000397906 EHMT2Q96KQ7 1210 aa18.74■□□□□ 0.59
TTC28-201ENST00000397906 SHROOM4Q9ULL8 1493 aa18.71■□□□□ 0.59
TTC28-201ENST00000397906 NISCHQ9Y2I1 1504 aa18.57■□□□□ 0.56
TTC28-201ENST00000397906 TTBK1Q5TCY1 1321 aaPredicted RBP18.03■□□□□ 0.48
TTC28-201ENST00000397906 APLP2Q06481 763 aa18.03■□□□□ 0.48
TTC28-201ENST00000397906 FAM9AQ8IZU1 332 aaPredicted RBP17.96■□□□□ 0.47
TTC28-201ENST00000397906 RANGAP1P46060 587 aaPredicted RBP17.93■□□□□ 0.46
TTC28-201ENST00000397906 ATP1B4Q9UN42 357 aaPredicted RBP17.75■□□□□ 0.43
TTC28-201ENST00000397906 PELP1Q8IZL8 1130 aaKnown RBP17.57■□□□□ 0.4
TTC28-201ENST00000397906 PCGF6Q9BYE7 350 aa17.46■□□□□ 0.39
TTC28-201ENST00000397906 TRIM41Q8WV44 630 aa17.4■□□□□ 0.38
TTC28-201ENST00000397906 UBTFP17480 764 aaKnown RBP17.35■□□□□ 0.37
TTC28-201ENST00000397906 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
TTC28-201ENST00000397906 MYT1LQ9UL68 1186 aa17.22■□□□□ 0.35
TTC28-201ENST00000397906 PPARGC1BQ86YN6 1023 aaKnown RBP17.14■□□□□ 0.33
TTC28-201ENST00000397906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.11■□□□□ 0.33
TTC28-201ENST00000397906 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
TTC28-201ENST00000397906 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
TTC28-201ENST00000397906 ERICH6Q7L0X2 663 aa17.03■□□□□ 0.32
TTC28-201ENST00000397906 ITGAEP38570 1179 aa16.96■□□□□ 0.31
TTC28-201ENST00000397906 YTHDC1Q96MU7 727 aaKnown RBP16.96■□□□□ 0.3
TTC28-201ENST00000397906 POLR3GLQ9BT43 218 aa16.92■□□□□ 0.3
TTC28-201ENST00000397906 CENPBP07199 599 aaPredicted RBP16.88■□□□□ 0.29
TTC28-201ENST00000397906 CNGB1Q14028 1251 aaPredicted RBP16.84■□□□□ 0.29
TTC28-201ENST00000397906 ZEB1P37275 1124 aaPredicted RBP16.79■□□□□ 0.28
TTC28-201ENST00000397906 NEFLP07196 543 aa16.77■□□□□ 0.27
TTC28-201ENST00000397906 SLC4A1APQ9BWU0 796 aaKnown RBP16.75■□□□□ 0.27
TTC28-201ENST00000397906 PABPN1Q86U42 306 aaKnown RBP eCLIP16.68■□□□□ 0.26
TTC28-201ENST00000397906 ABCC9O60706 1549 aa16.65■□□□□ 0.26
TTC28-201ENST00000397906 FBLN2P98095 1184 aa16.54■□□□□ 0.24
TTC28-201ENST00000397906 LOC105371045A0A1W2PR82 267 aa16.53■□□□□ 0.24
TTC28-201ENST00000397906 FAM50AQ14320 339 aaKnown RBP16.45■□□□□ 0.22
TTC28-201ENST00000397906 TRIM26Q12899 539 aaPredicted RBP16.44■□□□□ 0.22
TTC28-201ENST00000397906 DAXXQ9UER7 740 aaPredicted RBP16.43■□□□□ 0.22
TTC28-201ENST00000397906 TRIM52Q96A61 297 aa16.38■□□□□ 0.21
TTC28-201ENST00000397906 ARID3CA6NKF2 412 aa16.32■□□□□ 0.2
TTC28-201ENST00000397906 ZNF326Q5BKZ1 582 aaKnown RBP16.29■□□□□ 0.2
TTC28-201ENST00000397906 BCANQ96GW7 911 aa16.28■□□□□ 0.2
TTC28-201ENST00000397906 MYT1Q01538 1121 aa16.26■□□□□ 0.19
TTC28-201ENST00000397906 SLC24A1O60721 1099 aa16.26■□□□□ 0.19
TTC28-201ENST00000397906 NEUROD1Q13562 356 aa16.25■□□□□ 0.19
TTC28-201ENST00000397906 PLPPR3Q6T4P5 718 aa16.22■□□□□ 0.19
TTC28-201ENST00000397906 CLSPNQ9HAW4 1339 aa16.21■□□□□ 0.19
TTC28-201ENST00000397906 HRCP23327 699 aa16.19■□□□□ 0.18
TTC28-201ENST00000397906 BCL11AQ9H165 835 aa16.16■□□□□ 0.18
TTC28-201ENST00000397906 P3H3Q8IVL6 736 aa16.16■□□□□ 0.18
TTC28-201ENST00000397906 ZNF777Q9ULD5 760 aaPredicted RBP16.07■□□□□ 0.16
TTC28-201ENST00000397906 ZNF316A6NFI3 1004 aaPredicted RBP16.06■□□□□ 0.16
TTC28-201ENST00000397906 ESF1Q9H501 851 aaKnown RBP15.99■□□□□ 0.15
TTC28-201ENST00000397906 DIEXFQ68CQ4 756 aaKnown RBP15.95■□□□□ 0.14
TTC28-201ENST00000397906 ZBTB47Q9UFB7 747 aaPredicted RBP15.94■□□□□ 0.14
TTC28-201ENST00000397906 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
TTC28-201ENST00000397906 CANXP27824 592 aaKnown RBP15.89■□□□□ 0.13
TTC28-201ENST00000397906 CHGAP10645 457 aaKnown RBP15.89■□□□□ 0.13
TTC28-201ENST00000397906 SCRIBQ14160 1630 aa15.88■□□□□ 0.13
TTC28-201ENST00000397906 NEFMP07197 916 aa15.86■□□□□ 0.13
TTC28-201ENST00000397906 ANP32CO43423 234 aa15.83■□□□□ 0.12
TTC28-201ENST00000397906 NPM1P06748 294 aaKnown RBP eCLIP15.82■□□□□ 0.12
TTC28-201ENST00000397906 RTL5Q5HYW3 569 aaPredicted RBP15.79■□□□□ 0.12
TTC28-201ENST00000397906 SENP3Q9H4L4 574 aaPredicted RBP15.77■□□□□ 0.12
TTC28-201ENST00000397906 SCAF1Q9H7N4 1312 aaKnown RBP15.76■□□□□ 0.11
TTC28-201ENST00000397906 CDK11AQ9UQ88 783 aaPredicted RBP15.74■□□□□ 0.11
TTC28-201ENST00000397906 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.72■□□□□ 0.116e-8■■■■□ 23.6
TTC28-201ENST00000397906 PLEKHG5O94827 1062 aa15.7■□□□□ 0.1
TTC28-201ENST00000397906 A0A0G2JS52 829 aa15.68■□□□□ 0.1
TTC28-201ENST00000397906 CSRNP3Q8WYN3 585 aa15.65■□□□□ 0.1
TTC28-201ENST00000397906 CHIC2Q9UKJ5 165 aa15.63■□□□□ 0.09
TTC28-201ENST00000397906 ZBTB7CA1YPR0 619 aa15.6■□□□□ 0.09
TTC28-201ENST00000397906 CHMP7Q8WUX9 453 aaPredicted RBP15.59■□□□□ 0.09
TTC28-201ENST00000397906 SALL2Q9Y467 1007 aaPredicted RBP15.56■□□□□ 0.08
TTC28-201ENST00000397906 KCNH8Q96L42 1107 aa15.52■□□□□ 0.07
TTC28-201ENST00000397906 TONSLQ96HA7 1378 aa15.51■□□□□ 0.07
TTC28-201ENST00000397906 C14orf37Q86TY3 774 aa15.51■□□□□ 0.07
TTC28-201ENST00000397906 KDM2AQ9Y2K7 1162 aa15.51■□□□□ 0.07
TTC28-201ENST00000397906 NPM2Q86SE8 214 aaKnown RBP15.5■□□□□ 0.07
TTC28-201ENST00000397906 GTF3C3Q9Y5Q9 886 aa15.49■□□□□ 0.07
TTC28-201ENST00000397906 ARID4BQ4LE39 1312 aaPredicted RBP15.48■□□□□ 0.07
TTC28-201ENST00000397906 FAM9BQ8IZU0 186 aa15.44■□□□□ 0.06
TTC28-201ENST00000397906 PPP1R15AO75807 674 aaPredicted RBP15.43■□□□□ 0.06
TTC28-201ENST00000397906 TSPY4P0CV99 314 aa15.41■□□□□ 0.06
TTC28-201ENST00000397906 TSPY10P0CW01 314 aa15.41■□□□□ 0.06
TTC28-201ENST00000397906 HSP90AA1P07900 732 aaKnown RBP15.39■□□□□ 0.05
TTC28-201ENST00000397906 HAP1P54257 671 aaPredicted RBP15.38■□□□□ 0.05
TTC28-201ENST00000397906 MTUS2Q5JR59 1369 aa15.38■□□□□ 0.05
TTC28-201ENST00000397906 DDX10Q13206 875 aaKnown RBP15.35■□□□□ 0.05
TTC28-201ENST00000397906 HNRNPUQ00839 825 aaKnown RBP eCLIP15.34■□□□□ 0.05
TTC28-201ENST00000397906 ANP32AP39687 249 aaKnown RBP15.33■□□□□ 0.04
TTC28-201ENST00000397906 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
TTC28-201ENST00000397906 WDR43Q15061 677 aaKnown RBP eCLIP15.32■□□□□ 0.04
TTC28-201ENST00000397906 RRP7BPQ9NSQ0 103 aa15.32■□□□□ 0.04
TTC28-201ENST00000397906 TMC1Q8TDI8 760 aa15.31■□□□□ 0.04
TTC28-201ENST00000397906 HIRIP3Q9BW71 556 aaPredicted RBP15.3■□□□□ 0.04
TTC28-201ENST00000397906 ARXQ96QS3 562 aa15.3■□□□□ 0.04
TTC28-201ENST00000397906 RB1CC1Q8TDY2 1594 aa15.29■□□□□ 0.04
TTC28-201ENST00000397906 TRHP20396 242 aaPredicted RBP15.29■□□□□ 0.04
TTC28-201ENST00000397906 RGL3Q3MIN7 710 aa15.27■□□□□ 0.03
TTC28-201ENST00000397906 ZCCHC6Q5VYS8 1495 aaKnown RBP15.26■□□□□ 0.03
TTC28-201ENST00000397906 FKBP8Q14318 412 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms