Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC32.2■■■□□ 2.75
MSH5O43196 AC074183.2-201ENST00000623112 922 ntBASIC32.2■■■□□ 2.75
MSH5O43196 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.75
MSH5O43196 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
MSH5O43196 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC32.19■■■□□ 2.74
MSH5O43196 AL139393.2-201ENST00000608721 2025 ntBASIC32.19■■■□□ 2.74
MSH5O43196 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 BEX3-202ENST00000372634 753 ntTSL 2 BASIC32.19■■■□□ 2.74
MSH5O43196 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH5O43196 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
MSH5O43196 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC32.18■■■□□ 2.74
MSH5O43196 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
MSH5O43196 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC32.16■■■□□ 2.74
MSH5O43196 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC32.16■■■□□ 2.74
MSH5O43196 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
MSH5O43196 AL359258.2-201ENST00000564063 1566 ntBASIC32.15■■■□□ 2.74
MSH5O43196 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC32.15■■■□□ 2.74
MSH5O43196 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
MSH5O43196 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
MSH5O43196 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC32.15■■■□□ 2.74
MSH5O43196 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
MSH5O43196 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
MSH5O43196 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
MSH5O43196 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
MSH5O43196 GUSBP5-201ENST00000418136 578 ntBASIC32.14■■■□□ 2.74
MSH5O43196 SPCS2P3-201ENST00000500401 656 ntBASIC32.14■■■□□ 2.74
MSH5O43196 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
MSH5O43196 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
MSH5O43196 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC32.14■■■□□ 2.74
MSH5O43196 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
MSH5O43196 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
MSH5O43196 MIR935-201ENST00000401179 91 ntBASIC32.13■■■□□ 2.73
MSH5O43196 OR2A1-AS1-204ENST00000470435 602 ntBASIC32.13■■■□□ 2.73
MSH5O43196 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
MSH5O43196 AC103834.1-201ENST00000520383 144 ntBASIC32.13■■■□□ 2.73
MSH5O43196 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH5O43196 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH5O43196 AL135925.1-201ENST00000605920 1701 ntBASIC32.12■■■□□ 2.73
MSH5O43196 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC32.12■■■□□ 2.73
MSH5O43196 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC32.12■■■□□ 2.73
MSH5O43196 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH5O43196 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH5O43196 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
MSH5O43196 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
MSH5O43196 AC093536.1-201ENST00000569153 554 ntBASIC32.11■■■□□ 2.73
MSH5O43196 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC32.11■■■□□ 2.73
MSH5O43196 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
MSH5O43196 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC32.1■■■□□ 2.73
MSH5O43196 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
MSH5O43196 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
MSH5O43196 AC093323.1-202ENST00000635031 2045 ntBASIC32.1■■■□□ 2.73
MSH5O43196 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC32.1■■■□□ 2.73
MSH5O43196 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC32.1■■■□□ 2.73
MSH5O43196 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
MSH5O43196 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC32.09■■■□□ 2.73
MSH5O43196 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC32.09■■■□□ 2.73
MSH5O43196 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
MSH5O43196 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
MSH5O43196 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC32.09■■■□□ 2.73
MSH5O43196 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC32.09■■■□□ 2.73
MSH5O43196 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC32.09■■■□□ 2.73
MSH5O43196 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
MSH5O43196 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
MSH5O43196 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC32.08■■■□□ 2.73
MSH5O43196 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC32.08■■■□□ 2.73
MSH5O43196 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
MSH5O43196 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
MSH5O43196 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
MSH5O43196 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC32.07■■■□□ 2.72
MSH5O43196 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC32.06■■■□□ 2.72
MSH5O43196 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
MSH5O43196 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC32.06■■■□□ 2.72
MSH5O43196 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC32.06■■■□□ 2.72
MSH5O43196 HYI-210ENST00000486909 905 ntTSL 5 BASIC32.06■■■□□ 2.72
MSH5O43196 MIR6765-201ENST00000614092 87 ntBASIC32.06■■■□□ 2.72
MSH5O43196 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC32.06■■■□□ 2.72
MSH5O43196 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC32.06■■■□□ 2.72
MSH5O43196 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH5O43196 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC32.05■■■□□ 2.72
MSH5O43196 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC32.05■■■□□ 2.72
MSH5O43196 PVT1_1.1-201ENST00000615125 194 ntBASIC32.05■■■□□ 2.72
MSH5O43196 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC32.04■■■□□ 2.72
MSH5O43196 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
MSH5O43196 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
MSH5O43196 AC025884.2-201ENST00000553429 711 ntBASIC32.03■■■□□ 2.72
MSH5O43196 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC32.03■■■□□ 2.72
MSH5O43196 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
MSH5O43196 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC32.03■■■□□ 2.72
MSH5O43196 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
MSH5O43196 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
MSH5O43196 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
MSH5O43196 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
MSH5O43196 RAP2CP1-202ENST00000605179 643 ntBASIC32.02■■■□□ 2.72
MSH5O43196 AC006213.4-201ENST00000616184 634 ntBASIC32.02■■■□□ 2.72
MSH5O43196 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms