Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.63■■■□□ 2.49
NPHP1O15259 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP1O15259 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.62■■■□□ 2.49
NPHP1O15259 LONRF2P2-201ENST00000439212 571 ntBASIC30.62■■■□□ 2.49
NPHP1O15259 KRT125P-201ENST00000546827 989 ntBASIC30.62■■■□□ 2.49
NPHP1O15259 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.62■■■□□ 2.49
NPHP1O15259 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP1O15259 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
NPHP1O15259 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.61■■■□□ 2.49
NPHP1O15259 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.61■■■□□ 2.49
NPHP1O15259 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP1O15259 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP1O15259 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.6■■■□□ 2.49
NPHP1O15259 AC008406.3-201ENST00000620001 1374 ntBASIC30.6■■■□□ 2.49
NPHP1O15259 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.59■■■□□ 2.49
NPHP1O15259 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.58■■■□□ 2.49
NPHP1O15259 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP1O15259 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
NPHP1O15259 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.57■■■□□ 2.48
NPHP1O15259 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP1O15259 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.56■■■□□ 2.48
NPHP1O15259 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.56■■■□□ 2.48
NPHP1O15259 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP1O15259 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.55■■■□□ 2.48
NPHP1O15259 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP1O15259 BX664725.1-201ENST00000438252 379 ntBASIC30.55■■■□□ 2.48
NPHP1O15259 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.55■■■□□ 2.48
NPHP1O15259 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
NPHP1O15259 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP1O15259 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.54■■■□□ 2.48
NPHP1O15259 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.54■■■□□ 2.48
NPHP1O15259 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
NPHP1O15259 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.54■■■□□ 2.48
NPHP1O15259 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC30.54■■■□□ 2.48
NPHP1O15259 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP1O15259 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP1O15259 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP1O15259 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP1O15259 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP1O15259 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
NPHP1O15259 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
NPHP1O15259 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.52■■■□□ 2.48
NPHP1O15259 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.52■■■□□ 2.48
NPHP1O15259 MIR4787-201ENST00000607364 84 ntBASIC30.52■■■□□ 2.48
NPHP1O15259 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP1O15259 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
NPHP1O15259 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP1O15259 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP1O15259 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP1O15259 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.51■■■□□ 2.47
NPHP1O15259 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.47
NPHP1O15259 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP1O15259 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.51■■■□□ 2.47
NPHP1O15259 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP1O15259 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
NPHP1O15259 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP1O15259 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.5■■■□□ 2.47
NPHP1O15259 KRT18P10-201ENST00000388836 1287 ntBASIC30.49■■■□□ 2.47
NPHP1O15259 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP1O15259 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.49■■■□□ 2.47
NPHP1O15259 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.49■■■□□ 2.47
NPHP1O15259 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP1O15259 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
NPHP1O15259 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP1O15259 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP1O15259 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
NPHP1O15259 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
NPHP1O15259 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP1O15259 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP1O15259 AC022616.5-201ENST00000518796 181 ntBASIC30.47■■■□□ 2.47
NPHP1O15259 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
NPHP1O15259 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
NPHP1O15259 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP1O15259 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP1O15259 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.45■■■□□ 2.47
NPHP1O15259 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
NPHP1O15259 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP1O15259 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
NPHP1O15259 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP1O15259 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.44■■■□□ 2.46
NPHP1O15259 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP1O15259 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP1O15259 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
NPHP1O15259 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.43■■■□□ 2.46
NPHP1O15259 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP1O15259 KRT16P3-201ENST00000439127 1283 ntBASIC30.42■■■□□ 2.46
NPHP1O15259 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.42■■■□□ 2.46
NPHP1O15259 AL449106.1-201ENST00000608517 1980 ntBASIC30.42■■■□□ 2.46
NPHP1O15259 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP1O15259 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms