Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CDX4O14627 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC23.83■■□□□ 1.41
CDX4O14627 KRT18P24-201ENST00000344739 1156 ntBASIC23.83■■□□□ 1.41
CDX4O14627 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CDX4O14627 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX4O14627 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX4O14627 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.82■■□□□ 1.4
CDX4O14627 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.82■■□□□ 1.4
CDX4O14627 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.82■■□□□ 1.4
CDX4O14627 AC137630.3-201ENST00000607245 391 ntBASIC23.82■■□□□ 1.4
CDX4O14627 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.82■■□□□ 1.4
CDX4O14627 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CDX4O14627 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.82■■□□□ 1.4
CDX4O14627 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
CDX4O14627 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.81■■□□□ 1.4
CDX4O14627 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX4O14627 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CDX4O14627 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX4O14627 TSPY9P-201ENST00000440215 945 ntBASIC23.81■■□□□ 1.4
CDX4O14627 TSPY11P-201ENST00000442607 1045 ntBASIC23.81■■□□□ 1.4
CDX4O14627 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.81■■□□□ 1.4
CDX4O14627 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX4O14627 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX4O14627 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.8■■□□□ 1.4
CDX4O14627 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.8■■□□□ 1.4
CDX4O14627 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.8■■□□□ 1.4
CDX4O14627 AC131281.2-201ENST00000520478 145 ntBASIC23.79■■□□□ 1.4
CDX4O14627 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.79■■□□□ 1.4
CDX4O14627 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDX4O14627 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDX4O14627 AC021242.3-201ENST00000607598 1377 ntBASIC23.78■■□□□ 1.4
CDX4O14627 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.78■■□□□ 1.4
CDX4O14627 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.78■■□□□ 1.4
CDX4O14627 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.78■■□□□ 1.4
CDX4O14627 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CDX4O14627 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CDX4O14627 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDX4O14627 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX4O14627 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.77■■□□□ 1.4
CDX4O14627 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.77■■□□□ 1.4
CDX4O14627 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.77■■□□□ 1.4
CDX4O14627 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDX4O14627 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDX4O14627 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDX4O14627 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDX4O14627 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDX4O14627 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.76■■□□□ 1.39
CDX4O14627 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CDX4O14627 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDX4O14627 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.75■■□□□ 1.39
CDX4O14627 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDX4O14627 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CDX4O14627 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
CDX4O14627 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDX4O14627 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.74■■□□□ 1.39
CDX4O14627 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.74■■□□□ 1.39
CDX4O14627 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.74■■□□□ 1.39
CDX4O14627 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.74■■□□□ 1.39
CDX4O14627 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.73■■□□□ 1.39
CDX4O14627 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CDX4O14627 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.73■■□□□ 1.39
CDX4O14627 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CDX4O14627 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.72■■□□□ 1.39
CDX4O14627 AL136116.3-201ENST00000402907 1138 ntBASIC23.72■■□□□ 1.39
CDX4O14627 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CDX4O14627 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CDX4O14627 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.71■■□□□ 1.39
CDX4O14627 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
CDX4O14627 KRT18P10-201ENST00000388836 1287 ntBASIC23.71■■□□□ 1.39
CDX4O14627 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
CDX4O14627 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.71■■□□□ 1.39
CDX4O14627 AC092028.1-203ENST00000608262 953 ntBASIC23.71■■□□□ 1.39
CDX4O14627 AC110285.6-201ENST00000617652 491 ntBASIC23.71■■□□□ 1.39
CDX4O14627 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.7■■□□□ 1.39
CDX4O14627 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.7■■□□□ 1.38
CDX4O14627 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX4O14627 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.69■■□□□ 1.38
CDX4O14627 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX4O14627 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.69■■□□□ 1.38
CDX4O14627 AC120024.1-201ENST00000562672 995 ntBASIC23.69■■□□□ 1.38
CDX4O14627 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.69■■□□□ 1.38
CDX4O14627 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
CDX4O14627 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.68■■□□□ 1.38
CDX4O14627 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.68■■□□□ 1.38
CDX4O14627 AC005837.3-201ENST00000612163 286 ntBASIC23.68■■□□□ 1.38
CDX4O14627 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.68■■□□□ 1.38
CDX4O14627 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDX4O14627 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CDX4O14627 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
CDX4O14627 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDX4O14627 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CDX4O14627 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDX4O14627 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDX4O14627 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
CDX4O14627 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDX4O14627 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CDX4O14627 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CDX4O14627 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.65■■□□□ 1.38
CDX4O14627 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.65■■□□□ 1.38
CDX4O14627 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms