Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SDCBPO00560 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.4■□□□□ 0.86
SDCBPO00560 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SDCBPO00560 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.39■□□□□ 0.86
SDCBPO00560 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SDCBPO00560 MIR219A2-201ENST00000608502 1504 ntBASIC20.39■□□□□ 0.85
SDCBPO00560 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDCBPO00560 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SDCBPO00560 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.39■□□□□ 0.85
SDCBPO00560 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDCBPO00560 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
SDCBPO00560 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDCBPO00560 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.38■□□□□ 0.85
SDCBPO00560 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SDCBPO00560 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.38■□□□□ 0.85
SDCBPO00560 AC148477.6-201ENST00000623746 465 ntBASIC20.38■□□□□ 0.85
SDCBPO00560 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SDCBPO00560 AC142381.3-201ENST00000568208 1670 ntBASIC20.38■□□□□ 0.85
SDCBPO00560 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SDCBPO00560 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDCBPO00560 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDCBPO00560 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDCBPO00560 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SDCBPO00560 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.37■□□□□ 0.85
SDCBPO00560 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDCBPO00560 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SDCBPO00560 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SDCBPO00560 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.36■□□□□ 0.85
SDCBPO00560 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.36■□□□□ 0.85
SDCBPO00560 HLA-V-202ENST00000446817 847 ntBASIC20.36■□□□□ 0.85
SDCBPO00560 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.36■□□□□ 0.85
SDCBPO00560 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.36■□□□□ 0.85
SDCBPO00560 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDCBPO00560 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDCBPO00560 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SDCBPO00560 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDCBPO00560 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDCBPO00560 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.35■□□□□ 0.85
SDCBPO00560 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.35■□□□□ 0.85
SDCBPO00560 MIR3648-2-201ENST00000581792 180 ntBASIC20.35■□□□□ 0.85
SDCBPO00560 MIR3648-1-201ENST00000615959 180 ntBASIC20.35■□□□□ 0.85
SDCBPO00560 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.35■□□□□ 0.85
SDCBPO00560 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 AC022211.4-201ENST00000625094 2161 ntBASIC20.35■□□□□ 0.85
SDCBPO00560 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDCBPO00560 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDCBPO00560 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDCBPO00560 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.34■□□□□ 0.85
SDCBPO00560 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDCBPO00560 AC138932.3-201ENST00000567634 1902 ntBASIC20.33■□□□□ 0.85
SDCBPO00560 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDCBPO00560 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SDCBPO00560 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDCBPO00560 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SDCBPO00560 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SDCBPO00560 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SDCBPO00560 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SDCBPO00560 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDCBPO00560 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.32■□□□□ 0.84
SDCBPO00560 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SDCBPO00560 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDCBPO00560 AC016575.1-201ENST00000607026 382 ntBASIC20.32■□□□□ 0.84
SDCBPO00560 MIR7108-201ENST00000614319 87 ntBASIC20.32■□□□□ 0.84
SDCBPO00560 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SDCBPO00560 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDCBPO00560 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDCBPO00560 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SDCBPO00560 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.31■□□□□ 0.84
SDCBPO00560 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SDCBPO00560 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDCBPO00560 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDCBPO00560 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.31■□□□□ 0.84
SDCBPO00560 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDCBPO00560 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SDCBPO00560 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SDCBPO00560 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDCBPO00560 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDCBPO00560 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SDCBPO00560 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SDCBPO00560 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.3■□□□□ 0.84
SDCBPO00560 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.3■□□□□ 0.84
SDCBPO00560 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SDCBPO00560 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SDCBPO00560 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDCBPO00560 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
SDCBPO00560 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
SDCBPO00560 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms