Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC163A0A0D9SF12 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC163A0A0D9SF12 UNC93B8-201ENST00000511903 705 ntBASIC24.36■■□□□ 1.49
CCDC163A0A0D9SF12 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.36■■□□□ 1.49
CCDC163A0A0D9SF12 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC163A0A0D9SF12 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC163A0A0D9SF12 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.35■■□□□ 1.49
CCDC163A0A0D9SF12 KRT16P3-201ENST00000439127 1283 ntBASIC24.35■■□□□ 1.49
CCDC163A0A0D9SF12 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC163A0A0D9SF12 AC137630.3-201ENST00000607245 391 ntBASIC24.34■■□□□ 1.49
CCDC163A0A0D9SF12 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
CCDC163A0A0D9SF12 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
CCDC163A0A0D9SF12 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC163A0A0D9SF12 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.33■■□□□ 1.49
CCDC163A0A0D9SF12 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.33■■□□□ 1.49
CCDC163A0A0D9SF12 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CCDC163A0A0D9SF12 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.32■■□□□ 1.48
CCDC163A0A0D9SF12 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC163A0A0D9SF12 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC163A0A0D9SF12 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC163A0A0D9SF12 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.32■■□□□ 1.48
CCDC163A0A0D9SF12 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CCDC163A0A0D9SF12 MIR638-201ENST00000385237 100 ntBASIC24.3■■□□□ 1.48
CCDC163A0A0D9SF12 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.3■■□□□ 1.48
CCDC163A0A0D9SF12 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC163A0A0D9SF12 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC163A0A0D9SF12 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC163A0A0D9SF12 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 AC021242.3-201ENST00000607598 1377 ntBASIC24.28■■□□□ 1.48
CCDC163A0A0D9SF12 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC163A0A0D9SF12 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.27■■□□□ 1.48
CCDC163A0A0D9SF12 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC163A0A0D9SF12 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
CCDC163A0A0D9SF12 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.25■■□□□ 1.47
CCDC163A0A0D9SF12 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.25■■□□□ 1.47
CCDC163A0A0D9SF12 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC163A0A0D9SF12 AL139246.5-201ENST00000606645 996 ntBASIC24.25■■□□□ 1.47
CCDC163A0A0D9SF12 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC163A0A0D9SF12 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC163A0A0D9SF12 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
CCDC163A0A0D9SF12 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC163A0A0D9SF12 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC163A0A0D9SF12 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.22■■□□□ 1.47
CCDC163A0A0D9SF12 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CCDC163A0A0D9SF12 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC163A0A0D9SF12 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.21■■□□□ 1.47
CCDC163A0A0D9SF12 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 AC092028.1-203ENST00000608262 953 ntBASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
CCDC163A0A0D9SF12 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 AC120024.1-201ENST00000562672 995 ntBASIC24.19■■□□□ 1.46
CCDC163A0A0D9SF12 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC163A0A0D9SF12 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 TSPY9P-201ENST00000440215 945 ntBASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 TSPY11P-201ENST00000442607 1045 ntBASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.17■■□□□ 1.46
CCDC163A0A0D9SF12 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC163A0A0D9SF12 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC163A0A0D9SF12 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.16■■□□□ 1.46
CCDC163A0A0D9SF12 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms