Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM185BP-201ENST00000443595 716 ntBASIC18.48■□□□□ 0.55
CNTN3Q9P232 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.48■□□□□ 0.55
CNTN3Q9P232 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.48■□□□□ 0.55
CNTN3Q9P232 GPALPP1-207ENST00000611650 899 ntBASIC18.48■□□□□ 0.55
CNTN3Q9P232 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.48■□□□□ 0.55
CNTN3Q9P232 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.48■□□□□ 0.55
CNTN3Q9P232 AL513190.1-201ENST00000621254 727 ntBASIC18.48■□□□□ 0.55
CNTN3Q9P232 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNTN3Q9P232 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 GPX1P2-201ENST00000429271 606 ntBASIC18.47■□□□□ 0.55
CNTN3Q9P232 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 DNAJB3-201ENST00000446806 729 ntBASIC18.47■□□□□ 0.55
CNTN3Q9P232 AC107918.2-201ENST00000530817 355 ntBASIC18.47■□□□□ 0.55
CNTN3Q9P232 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 ACTL9-202ENST00000612068 1252 ntBASIC18.47■□□□□ 0.55
CNTN3Q9P232 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTN3Q9P232 AC129492.6-201ENST00000611383 1305 ntBASIC18.47■□□□□ 0.55
CNTN3Q9P232 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CNTN3Q9P232 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 RPSAP43-201ENST00000402237 625 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 UPF3AP3-201ENST00000420996 769 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 MTDHP5-201ENST00000598980 586 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 AC139530.3-201ENST00000620344 690 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 AC004877.2-201ENST00000623941 599 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CROCCP2-202ENST00000412962 2773 ntBASIC18.46■□□□□ 0.55
CNTN3Q9P232 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTN3Q9P232 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.46■□□□□ 0.54
CNTN3Q9P232 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.46■□□□□ 0.54
CNTN3Q9P232 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 MIR1233-2-201ENST00000408138 82 ntBASIC18.45■□□□□ 0.54
CNTN3Q9P232 MIR1233-1-201ENST00000408722 82 ntBASIC18.45■□□□□ 0.54
CNTN3Q9P232 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 KRT19P2-202ENST00000557173 1012 ntBASIC18.45■□□□□ 0.54
CNTN3Q9P232 PDPK2P-202ENST00000562415 1191 ntBASIC18.45■□□□□ 0.54
CNTN3Q9P232 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 AC010327.4-202ENST00000591484 748 ntBASIC18.45■□□□□ 0.54
CNTN3Q9P232 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTN3Q9P232 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTN3Q9P232 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms