Protein–RNA interactions for Protein: Q9BZL3

SMIM3, Small integral membrane protein 3, humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM3Q9BZL3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 KRT17P3-201ENST00000420566 1262 ntBASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AL138781.1-201ENST00000566567 1274 ntBASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AC008403.3-201ENST00000598924 454 ntBASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 MIR6786-201ENST00000616843 113 ntBASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 ANKRD20A6P-201ENST00000618763 204 ntBASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMIM3Q9BZL3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
SMIM3Q9BZL3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SMIM3Q9BZL3 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 B3GAT3P1-201ENST00000471720 806 ntBASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 UNC93B5-201ENST00000530315 699 ntBASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 LINC00167-201ENST00000530583 1419 ntBASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 KRT8P7-201ENST00000533003 1432 ntBASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMIM3Q9BZL3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMIM3Q9BZL3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms