Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40CQ96S21 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40CQ96S21 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40CQ96S21 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RAB40CQ96S21 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40CQ96S21 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40CQ96S21 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40CQ96S21 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40CQ96S21 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40CQ96S21 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 MIR1238-201ENST00000408483 83 ntBASIC14.02□□□□□ -0.17
RAB40CQ96S21 AL596275.1-201ENST00000423464 877 ntBASIC14.02□□□□□ -0.17
RAB40CQ96S21 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.02□□□□□ -0.17
RAB40CQ96S21 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.02□□□□□ -0.17
RAB40CQ96S21 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40CQ96S21 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TSPY12P-201ENST00000421279 868 ntBASIC14.01□□□□□ -0.17
RAB40CQ96S21 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 FITM1-202ENST00000559294 800 ntBASIC14.01□□□□□ -0.17
RAB40CQ96S21 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.01□□□□□ -0.17
RAB40CQ96S21 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RAB40CQ96S21 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RAB40CQ96S21 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RAB40CQ96S21 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14□□□□□ -0.17
RAB40CQ96S21 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms