Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.13■□□□□ 0.49
USP46P62068 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.13■□□□□ 0.49
USP46P62068 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.13■□□□□ 0.49
USP46P62068 MIR4751-201ENST00000578027 74 ntBASIC18.13■□□□□ 0.49
USP46P62068 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
USP46P62068 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
USP46P62068 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.13■□□□□ 0.49
USP46P62068 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.13■□□□□ 0.49
USP46P62068 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.13■□□□□ 0.49
USP46P62068 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP46P62068 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 AC067852.2-201ENST00000590513 2313 ntBASIC18.12■□□□□ 0.49
USP46P62068 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.12■□□□□ 0.49
USP46P62068 AC008894.3-201ENST00000624324 3103 ntBASIC18.12■□□□□ 0.49
USP46P62068 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 AP002414.1-201ENST00000391405 1147 ntBASIC18.12■□□□□ 0.49
USP46P62068 KRT18P13-201ENST00000400056 1290 ntBASIC18.12■□□□□ 0.49
USP46P62068 BX842568.4-201ENST00000421222 227 ntBASIC18.12■□□□□ 0.49
USP46P62068 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.12■□□□□ 0.49
USP46P62068 RNA5SP416-201ENST00000516838 111 ntBASIC18.12■□□□□ 0.49
USP46P62068 OR7E47P-204ENST00000575924 449 ntBASIC18.12■□□□□ 0.49
USP46P62068 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
USP46P62068 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
USP46P62068 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
USP46P62068 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP46P62068 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
USP46P62068 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.11■□□□□ 0.49
USP46P62068 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
USP46P62068 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.11■□□□□ 0.49
USP46P62068 AC023274.1-201ENST00000418278 595 ntBASIC18.11■□□□□ 0.49
USP46P62068 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.11■□□□□ 0.49
USP46P62068 VN2R19P-201ENST00000442399 1052 ntBASIC18.11■□□□□ 0.49
USP46P62068 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
USP46P62068 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.11■□□□□ 0.49
USP46P62068 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.11■□□□□ 0.49
USP46P62068 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP46P62068 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.1■□□□□ 0.49
USP46P62068 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.1■□□□□ 0.49
USP46P62068 PI4KAP1-204ENST00000612579 1703 ntBASIC18.1■□□□□ 0.49
USP46P62068 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
USP46P62068 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
USP46P62068 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP46P62068 CRYGEP-201ENST00000412192 528 ntBASIC18.1■□□□□ 0.49
USP46P62068 IGLL3P-201ENST00000412472 434 ntBASIC18.1■□□□□ 0.49
USP46P62068 HCG4B-203ENST00000450128 991 ntBASIC18.1■□□□□ 0.49
USP46P62068 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.1■□□□□ 0.49
USP46P62068 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms