Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LHX1P48742 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.21■□□□□ 0.51
LHX1P48742 AC096734.2-201ENST00000562054 433 ntBASIC18.21■□□□□ 0.51
LHX1P48742 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.21■□□□□ 0.51
LHX1P48742 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.21■□□□□ 0.51
LHX1P48742 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.21■□□□□ 0.51
LHX1P48742 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.21■□□□□ 0.51
LHX1P48742 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.21■□□□□ 0.51
LHX1P48742 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LHX1P48742 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LHX1P48742 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.21■□□□□ 0.51
LHX1P48742 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LHX1P48742 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LHX1P48742 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LHX1P48742 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
LHX1P48742 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
LHX1P48742 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.2■□□□□ 0.5
LHX1P48742 SLC25A6P2-201ENST00000497974 877 ntBASIC18.2■□□□□ 0.5
LHX1P48742 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.2■□□□□ 0.5
LHX1P48742 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LHX1P48742 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.2■□□□□ 0.5
LHX1P48742 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
LHX1P48742 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.19■□□□□ 0.5
LHX1P48742 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 CXCL1P1-201ENST00000502804 216 ntBASIC18.19■□□□□ 0.5
LHX1P48742 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 AC002347.1-201ENST00000569543 541 ntBASIC18.19■□□□□ 0.5
LHX1P48742 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.19■□□□□ 0.5
LHX1P48742 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
LHX1P48742 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LHX1P48742 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LHX1P48742 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LHX1P48742 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.18■□□□□ 0.5
LHX1P48742 AC002310.6-201ENST00000624451 1377 ntBASIC18.18■□□□□ 0.5
LHX1P48742 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
LHX1P48742 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.18■□□□□ 0.5
LHX1P48742 BX842568.4-201ENST00000421222 227 ntBASIC18.18■□□□□ 0.5
LHX1P48742 AC004832.2-201ENST00000426397 482 ntBASIC18.18■□□□□ 0.5
LHX1P48742 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 RHOQP3-201ENST00000437982 621 ntBASIC18.18■□□□□ 0.5
LHX1P48742 FAM185BP-201ENST00000443595 716 ntBASIC18.18■□□□□ 0.5
LHX1P48742 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LHX1P48742 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.18■□□□□ 0.5
LHX1P48742 AC010507.1-201ENST00000633895 436 ntBASIC18.18■□□□□ 0.5
LHX1P48742 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
LHX1P48742 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LHX1P48742 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LHX1P48742 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms