Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.03■□□□□ -0
COL8A1P27658 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL8A1P27658 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.03■□□□□ -0
COL8A1P27658 AC010336.2-201ENST00000564226 506 ntBASIC15.03■□□□□ -0
COL8A1P27658 AL158211.3-201ENST00000607385 239 ntBASIC15.03■□□□□ -0
COL8A1P27658 AC004233.3-201ENST00000607794 1269 ntBASIC15.03■□□□□ -0
COL8A1P27658 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.03■□□□□ -0
COL8A1P27658 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.03■□□□□ -0
COL8A1P27658 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.03■□□□□ -0
COL8A1P27658 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
COL8A1P27658 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL8A1P27658 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.03■□□□□ -0
COL8A1P27658 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 AL161938.1-201ENST00000569833 2180 ntBASIC15.02■□□□□ -0
COL8A1P27658 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 UXT-AS1-201ENST00000590504 1525 ntBASIC15.02■□□□□ -0
COL8A1P27658 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
COL8A1P27658 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.02■□□□□ -0
COL8A1P27658 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.02■□□□□ -0
COL8A1P27658 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.02■□□□□ -0
COL8A1P27658 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.02■□□□□ -0
COL8A1P27658 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 MRPS18AP1-201ENST00000414458 589 ntBASIC15.02■□□□□ -0
COL8A1P27658 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 AC092580.3-201ENST00000430932 139 ntBASIC15.02■□□□□ -0
COL8A1P27658 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.02■□□□□ -0
COL8A1P27658 AL135744.1-201ENST00000565098 629 ntBASIC15.02■□□□□ -0
COL8A1P27658 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.02■□□□□ -0
COL8A1P27658 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL8A1P27658 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.02■□□□□ -0
COL8A1P27658 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL8A1P27658 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.02□□□□□ -0.01
COL8A1P27658 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL8A1P27658 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.02□□□□□ -0.01
COL8A1P27658 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL8A1P27658 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL8A1P27658 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.02□□□□□ -0.01
COL8A1P27658 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
COL8A1P27658 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL8A1P27658 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL8A1P27658 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.01□□□□□ -0.01
COL8A1P27658 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.01□□□□□ -0.01
COL8A1P27658 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.01□□□□□ -0.01
COL8A1P27658 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.01□□□□□ -0.01
COL8A1P27658 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.01□□□□□ -0.01
COL8A1P27658 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.01□□□□□ -0.01
COL8A1P27658 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 GNAS-203ENST00000306120 1878 ntBASIC15.01□□□□□ -0.01
COL8A1P27658 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.01□□□□□ -0.01
COL8A1P27658 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL8A1P27658 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms