Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL5A1P20908 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.37■□□□□ 0.21
COL5A1P20908 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.37■□□□□ 0.21
COL5A1P20908 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
COL5A1P20908 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL5A1P20908 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.36■□□□□ 0.21
COL5A1P20908 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.36■□□□□ 0.21
COL5A1P20908 IGHV3-42-201ENST00000520410 361 ntBASIC16.36■□□□□ 0.21
COL5A1P20908 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 SPDYE22P-201ENST00000582158 798 ntBASIC16.36■□□□□ 0.21
COL5A1P20908 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.36■□□□□ 0.21
COL5A1P20908 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.36■□□□□ 0.21
COL5A1P20908 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.36■□□□□ 0.21
COL5A1P20908 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL5A1P20908 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.36■□□□□ 0.21
COL5A1P20908 LYSMD4-203ENST00000378904 2122 ntBASIC16.36■□□□□ 0.21
COL5A1P20908 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
COL5A1P20908 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
COL5A1P20908 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.35■□□□□ 0.21
COL5A1P20908 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.35■□□□□ 0.21
COL5A1P20908 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.35■□□□□ 0.21
COL5A1P20908 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.35■□□□□ 0.21
COL5A1P20908 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL5A1P20908 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 IGHV3-62-201ENST00000520057 340 ntBASIC16.35■□□□□ 0.21
COL5A1P20908 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.35■□□□□ 0.21
COL5A1P20908 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.35■□□□□ 0.21
COL5A1P20908 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.35■□□□□ 0.21
COL5A1P20908 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.35■□□□□ 0.21
COL5A1P20908 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 AL138688.1-201ENST00000624851 1594 ntBASIC16.34■□□□□ 0.21
COL5A1P20908 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.34■□□□□ 0.21
COL5A1P20908 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
COL5A1P20908 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL5A1P20908 SLC25A1P3-201ENST00000395415 828 ntBASIC16.34■□□□□ 0.21
COL5A1P20908 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.34■□□□□ 0.21
COL5A1P20908 AC241585.1-201ENST00000433527 519 ntBASIC16.34■□□□□ 0.21
COL5A1P20908 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.34■□□□□ 0.21
COL5A1P20908 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL5A1P20908 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
COL5A1P20908 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.34■□□□□ 0.21
COL5A1P20908 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL5A1P20908 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 AC134043.2-201ENST00000624206 2238 ntBASIC16.34■□□□□ 0.21
COL5A1P20908 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL5A1P20908 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms