Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LDLRP01130 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LDLRP01130 AC008894.3-201ENST00000624324 3103 ntBASIC16.71■□□□□ 0.27
LDLRP01130 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.71■□□□□ 0.27
LDLRP01130 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LDLRP01130 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LDLRP01130 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LDLRP01130 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
LDLRP01130 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.26
LDLRP01130 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.7■□□□□ 0.26
LDLRP01130 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 AC022898.2-201ENST00000616822 1312 ntBASIC16.7■□□□□ 0.26
LDLRP01130 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
LDLRP01130 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
LDLRP01130 PCDH8P1-201ENST00000428983 2773 ntBASIC16.7■□□□□ 0.26
LDLRP01130 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.7■□□□□ 0.26
LDLRP01130 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.7■□□□□ 0.26
LDLRP01130 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 AC104819.1-201ENST00000504587 486 ntBASIC16.7■□□□□ 0.26
LDLRP01130 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.7■□□□□ 0.26
LDLRP01130 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 AL353801.3-201ENST00000609898 542 ntBASIC16.7■□□□□ 0.26
LDLRP01130 LINC01451-201ENST00000623792 534 ntBASIC16.7■□□□□ 0.26
LDLRP01130 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LDLRP01130 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.7■□□□□ 0.26
LDLRP01130 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.7■□□□□ 0.26
LDLRP01130 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDLRP01130 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LDLRP01130 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
LDLRP01130 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
LDLRP01130 MIR574-201ENST00000385209 96 ntBASIC16.69■□□□□ 0.26
LDLRP01130 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.69■□□□□ 0.26
LDLRP01130 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 AL136038.4-201ENST00000603606 1261 ntBASIC16.69■□□□□ 0.26
LDLRP01130 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 AF228730.7-201ENST00000641842 219 ntBASIC16.69■□□□□ 0.26
LDLRP01130 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms