Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 AL645728.1-201ENST00000366221 2101 ntBASIC19.93■□□□□ 0.78
CTDNEP1O95476 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 KRT18P56-201ENST00000507275 550 ntBASIC19.93■□□□□ 0.78
CTDNEP1O95476 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 PCDHA14-201ENST00000506751 2298 ntBASIC19.93■□□□□ 0.78
CTDNEP1O95476 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.93■□□□□ 0.78
CTDNEP1O95476 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDNEP1O95476 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 AC025062.2-201ENST00000605477 670 ntBASIC19.92■□□□□ 0.78
CTDNEP1O95476 IFNL4P1-201ENST00000607083 540 ntBASIC19.92■□□□□ 0.78
CTDNEP1O95476 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 UBALD1-205ENST00000590891 2641 ntBASIC19.92■□□□□ 0.78
CTDNEP1O95476 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDNEP1O95476 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDNEP1O95476 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 AC021087.4-201ENST00000563761 564 ntBASIC19.91■□□□□ 0.78
CTDNEP1O95476 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 MTDHP4-201ENST00000600287 670 ntBASIC19.91■□□□□ 0.78
CTDNEP1O95476 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDNEP1O95476 AL118508.1-201ENST00000613502 2345 ntBASIC19.91■□□□□ 0.78
CTDNEP1O95476 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDNEP1O95476 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CTDNEP1O95476 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CTDNEP1O95476 DUSP5P1-201ENST00000441325 1139 ntBASIC19.9■□□□□ 0.78
CTDNEP1O95476 SAPCD2P3-201ENST00000455031 850 ntBASIC19.9■□□□□ 0.78
CTDNEP1O95476 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 NCF1C-201ENST00000438382 1427 ntBASIC19.9■□□□□ 0.78
CTDNEP1O95476 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
CTDNEP1O95476 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms