Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 AC116562.4-201ENST00000641316 2276 ntBASIC23.91■■□□□ 1.42
NPHP4O75161 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC23.91■■□□□ 1.42
NPHP4O75161 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.91■■□□□ 1.42
NPHP4O75161 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 SLC7A15P-201ENST00000424028 1363 ntBASIC23.91■■□□□ 1.42
NPHP4O75161 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
NPHP4O75161 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 FUZ-207ENST00000526575 482 ntTSL 4 BASIC23.91■■□□□ 1.42
NPHP4O75161 AP005482.1-201ENST00000563722 1273 ntBASIC23.91■■□□□ 1.42
NPHP4O75161 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP4O75161 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP4O75161 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
NPHP4O75161 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP4O75161 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP4O75161 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP4O75161 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP4O75161 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP4O75161 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
NPHP4O75161 GALT-202ENST00000450095 1280 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 DOC2GP-202ENST00000514950 1163 ntBASIC23.9■■□□□ 1.42
NPHP4O75161 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
NPHP4O75161 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC23.9■■□□□ 1.42
NPHP4O75161 RN7SL828P-201ENST00000607615 303 ntBASIC23.9■■□□□ 1.42
NPHP4O75161 AC099568.2-201ENST00000609194 695 ntBASIC23.9■■□□□ 1.42
NPHP4O75161 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP4O75161 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP4O75161 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP4O75161 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP4O75161 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC23.89■■□□□ 1.42
NPHP4O75161 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP4O75161 AP000997.3-201ENST00000623333 2250 ntBASIC23.89■■□□□ 1.42
NPHP4O75161 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
NPHP4O75161 KRT18P55-202ENST00000578578 1546 ntBASIC23.89■■□□□ 1.42
NPHP4O75161 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC23.89■■□□□ 1.42
NPHP4O75161 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC23.89■■□□□ 1.42
NPHP4O75161 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.89■■□□□ 1.42
NPHP4O75161 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP4O75161 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.89■■□□□ 1.41
NPHP4O75161 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP4O75161 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP4O75161 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC23.89■■□□□ 1.41
NPHP4O75161 AC234783.1-201ENST00000441761 496 ntBASIC23.89■■□□□ 1.41
NPHP4O75161 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP4O75161 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC23.89■■□□□ 1.41
NPHP4O75161 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.89■■□□□ 1.41
NPHP4O75161 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC23.89■■□□□ 1.41
NPHP4O75161 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP4O75161 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP4O75161 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP4O75161 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC23.88■■□□□ 1.41
NPHP4O75161 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP4O75161 AL133215.2-201ENST00000609242 977 ntBASIC23.88■■□□□ 1.41
NPHP4O75161 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP4O75161 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
NPHP4O75161 LINC00895-201ENST00000629028 1637 ntBASIC23.88■■□□□ 1.41
NPHP4O75161 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
NPHP4O75161 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP4O75161 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.87■■□□□ 1.41
NPHP4O75161 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 AC055876.2-201ENST00000531834 546 ntBASIC23.87■■□□□ 1.41
NPHP4O75161 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC23.87■■□□□ 1.41
NPHP4O75161 MIR4538-201ENST00000581377 78 ntBASIC23.87■■□□□ 1.41
NPHP4O75161 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC23.87■■□□□ 1.41
NPHP4O75161 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 AC068587.10-201ENST00000641210 219 ntBASIC23.87■■□□□ 1.41
NPHP4O75161 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP4O75161 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP4O75161 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms