Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC65Q8IXS2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC65Q8IXS2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC65Q8IXS2 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC65Q8IXS2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC65Q8IXS2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 AC097637.2-201ENST00000624096 1997 ntBASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 PRYP5-201ENST00000451909 266 ntBASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 AL139288.1-201ENST00000623748 933 ntBASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC65Q8IXS2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 AL356309.3-201ENST00000624132 1934 ntBASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 AL121761.2-201ENST00000598007 1648 ntBASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 BX005266.1-201ENST00000473402 457 ntBASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 REXO1L6P-202ENST00000619970 1078 ntBASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 AL355877.3-201ENST00000622820 899 ntBASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC65Q8IXS2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 AC004817.3-201ENST00000602957 2129 ntBASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms