Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 CNN2P11-201ENST00000429351 262 ntBASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC027796.2-201ENST00000575326 344 ntBASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 AC068137.2-201ENST00000605408 478 ntBASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PAAF1Q9BRP4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 KRT18P28-201ENST00000453838 1332 ntBASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 AC129492.6-201ENST00000611383 1305 ntBASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.33■□□□□ 0.53
PAAF1Q9BRP4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
PAAF1Q9BRP4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 AC068880.1-201ENST00000507289 2297 ntBASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 METTL21AP1-201ENST00000438852 635 ntBASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 AC027612.4-201ENST00000605371 583 ntBASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 REXO1L3P-201ENST00000622202 1288 ntBASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.32■□□□□ 0.52
PAAF1Q9BRP4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms