Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP002414.2-201ENST00000591780 3365 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
FOXA3P55318 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 WWOX-216ENST00000569818 525 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
FOXA3P55318 GXYLT1P5-201ENST00000614548 1189 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 AC005052.1-201ENST00000625181 2492 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA3P55318 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 AC105917.1-201ENST00000506637 2539 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
FOXA3P55318 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 KRT8P9-201ENST00000558927 1449 ntBASIC13.04□□□□□ -0.32
FOXA3P55318 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA3P55318 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA3P55318 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA3P55318 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 AC078925.2-201ENST00000624013 1973 ntBASIC13.03□□□□□ -0.32
FOXA3P55318 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
FOXA3P55318 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
FOXA3P55318 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 MESTP1-201ENST00000404287 994 ntBASIC13.03□□□□□ -0.32
FOXA3P55318 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 AP003097.1-201ENST00000530657 1135 ntBASIC13.03□□□□□ -0.32
FOXA3P55318 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.03□□□□□ -0.32
FOXA3P55318 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 MIR4674-201ENST00000582457 87 ntBASIC13.03□□□□□ -0.32
FOXA3P55318 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC13.03□□□□□ -0.32
FOXA3P55318 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 CABP2-204ENST00000636477 941 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA3P55318 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA3P55318 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA3P55318 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.02□□□□□ -0.32
FOXA3P55318 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA3P55318 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.02□□□□□ -0.32
FOXA3P55318 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms