Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AL138781.2-201ENST00000617896 1843 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC100803.2-201ENST00000562459 1963 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 HTR7P1-202ENST00000624664 4411 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC063926.2-201ENST00000623766 1308 ntBASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC051619.7-201ENST00000568314 623 ntBASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AF228730.6-201ENST00000641497 218 ntBASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC084121.3-201ENST00000641716 218 ntBASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC105233.6-201ENST00000642093 218 ntBASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHGA1Q9Y5H4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC055876.3-201ENST00000431496 288 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AL592309.1-201ENST00000443127 649 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 DUX4L27-201ENST00000554796 1261 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC087641.1-201ENST00000557561 1021 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC099522.2-201ENST00000607001 744 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AC138649.4-201ENST00000612222 287 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 AP001059.3-201ENST00000619053 235 ntBASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHGA1Q9Y5H4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms