Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 AC008494.3-201ENST00000606615 944 ntBASIC16.93■□□□□ 0.3
VPS13AQ96RL7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 AC087163.2-201ENST00000457299 853 ntBASIC16.93■□□□□ 0.3
VPS13AQ96RL7 RN7SL837P-201ENST00000463010 287 ntBASIC16.93■□□□□ 0.3
VPS13AQ96RL7 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 ANKRD19P-201ENST00000338192 862 ntBASIC16.92■□□□□ 0.3
VPS13AQ96RL7 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS13AQ96RL7 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 LINC00896-202ENST00000609602 2128 ntBASIC16.91■□□□□ 0.3
VPS13AQ96RL7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 AC093010.1-201ENST00000473625 1624 ntBASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 AL133338.1-201ENST00000565695 1517 ntBASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 TEX28P1-201ENST00000613479 1221 ntBASIC16.91■□□□□ 0.3
VPS13AQ96RL7 TEX28P2-201ENST00000617764 1221 ntBASIC16.91■□□□□ 0.3
VPS13AQ96RL7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
VPS13AQ96RL7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 KRT8P44-201ENST00000441609 1350 ntBASIC16.9■□□□□ 0.3
VPS13AQ96RL7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 AL135999.2-201ENST00000622438 1686 ntBASIC16.9■□□□□ 0.3
VPS13AQ96RL7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms