Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 AL450487.1-201ENST00000426799 995 ntBASIC16.67■□□□□ 0.26
VMP1Q96GC9 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 AC138894.3-201ENST00000603787 634 ntBASIC16.66■□□□□ 0.26
VMP1Q96GC9 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VMP1Q96GC9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.66■□□□□ 0.26
VMP1Q96GC9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 POM121L3P-201ENST00000419331 1163 ntBASIC16.65■□□□□ 0.26
VMP1Q96GC9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 FOSL1P1-201ENST00000511041 816 ntBASIC16.65■□□□□ 0.26
VMP1Q96GC9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.65■□□□□ 0.26
VMP1Q96GC9 AC005336.2-201ENST00000593183 939 ntBASIC16.65■□□□□ 0.26
VMP1Q96GC9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms