Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 AP005117.1-201ENST00000584346 1413 ntBASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 SLC25A1P3-201ENST00000395415 828 ntBASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 KRT18P31-201ENST00000506277 1292 ntBASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC65Q8IXS2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 TSPY19P-201ENST00000418461 509 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 TSPY18P-201ENST00000441642 509 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 AP001269.4-201ENST00000609611 512 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 AL732292.2-201ENST00000609649 430 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 AC012313.1-201ENST00000593393 3059 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 SIGLEC16-201ENST00000599858 1437 ntBASIC19.25■□□□□ 0.67
CCDC65Q8IXS2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC65Q8IXS2 AC091304.2-201ENST00000564639 760 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms