Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.36■□□□□ 0.85
RHBDL3P58872 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.36■□□□□ 0.85
RHBDL3P58872 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 AL139400.1-201ENST00000366220 510 ntBASIC20.36■□□□□ 0.85
RHBDL3P58872 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 AC004461.1-201ENST00000412461 403 ntBASIC20.36■□□□□ 0.85
RHBDL3P58872 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.36■□□□□ 0.85
RHBDL3P58872 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.36■□□□□ 0.85
RHBDL3P58872 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.36■□□□□ 0.85
RHBDL3P58872 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.36■□□□□ 0.85
RHBDL3P58872 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RHBDL3P58872 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.36■□□□□ 0.85
RHBDL3P58872 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.36■□□□□ 0.85
RHBDL3P58872 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RHBDL3P58872 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
RHBDL3P58872 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 AC140658.5-201ENST00000438532 169 ntBASIC20.35■□□□□ 0.85
RHBDL3P58872 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.35■□□□□ 0.85
RHBDL3P58872 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.35■□□□□ 0.85
RHBDL3P58872 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.35■□□□□ 0.85
RHBDL3P58872 RFPL4AP1-201ENST00000530883 850 ntBASIC20.35■□□□□ 0.85
RHBDL3P58872 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RHBDL3P58872 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDL3P58872 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.35■□□□□ 0.85
RHBDL3P58872 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RHBDL3P58872 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.34■□□□□ 0.85
RHBDL3P58872 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.34■□□□□ 0.85
RHBDL3P58872 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.34■□□□□ 0.85
RHBDL3P58872 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.34■□□□□ 0.85
RHBDL3P58872 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.34■□□□□ 0.85
RHBDL3P58872 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RHBDL3P58872 AC022145.2-201ENST00000598203 171 ntBASIC20.34■□□□□ 0.85
RHBDL3P58872 AL645728.2-201ENST00000641974 660 ntBASIC20.34■□□□□ 0.85
RHBDL3P58872 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.34■□□□□ 0.85
RHBDL3P58872 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 EGFEM1P-202ENST00000431685 1563 ntBASIC20.34■□□□□ 0.85
RHBDL3P58872 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDL3P58872 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RHBDL3P58872 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.33■□□□□ 0.85
RHBDL3P58872 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 AC134043.2-201ENST00000624206 2238 ntBASIC20.33■□□□□ 0.85
RHBDL3P58872 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.33■□□□□ 0.85
RHBDL3P58872 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RHBDL3P58872 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
RHBDL3P58872 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
RHBDL3P58872 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 AC112191.1-201ENST00000523689 701 ntBASIC20.33■□□□□ 0.85
RHBDL3P58872 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDL3P58872 MIR4515-201ENST00000584082 81 ntBASIC20.33■□□□□ 0.85
RHBDL3P58872 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms