Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
VCPP55072 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.59■□□□□ 0.57
VCPP55072 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.59■□□□□ 0.57
VCPP55072 COX20P2-201ENST00000452636 358 ntBASIC18.59■□□□□ 0.57
VCPP55072 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.59■□□□□ 0.57
VCPP55072 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
VCPP55072 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.59■□□□□ 0.57
VCPP55072 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.59■□□□□ 0.57
VCPP55072 SNHG9-202ENST00000564014 471 ntBASIC18.59■□□□□ 0.57
VCPP55072 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.59■□□□□ 0.57
VCPP55072 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VCPP55072 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VCPP55072 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCPP55072 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCPP55072 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.58■□□□□ 0.57
VCPP55072 SIRPAP1-201ENST00000448467 1770 ntBASIC18.58■□□□□ 0.57
VCPP55072 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCPP55072 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
VCPP55072 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VCPP55072 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.58■□□□□ 0.56
VCPP55072 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.58■□□□□ 0.56
VCPP55072 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 HLA-J-202ENST00000469281 1241 ntBASIC18.58■□□□□ 0.56
VCPP55072 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.58■□□□□ 0.56
VCPP55072 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.58■□□□□ 0.56
VCPP55072 AC009533.2-201ENST00000543664 586 ntBASIC18.58■□□□□ 0.56
VCPP55072 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VCPP55072 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.58■□□□□ 0.56
VCPP55072 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.58■□□□□ 0.56
VCPP55072 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.58■□□□□ 0.56
VCPP55072 AL355312.1-201ENST00000407115 2176 ntBASIC18.58■□□□□ 0.56
VCPP55072 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCPP55072 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 MIR770-201ENST00000390219 98 ntBASIC18.57■□□□□ 0.56
VCPP55072 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.57■□□□□ 0.56
VCPP55072 AL645939.2-201ENST00000427340 991 ntBASIC18.57■□□□□ 0.56
VCPP55072 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.57■□□□□ 0.56
VCPP55072 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.57■□□□□ 0.56
VCPP55072 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
VCPP55072 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.57■□□□□ 0.56
VCPP55072 AC011467.4-201ENST00000594891 528 ntBASIC18.57■□□□□ 0.56
VCPP55072 AC106028.4-201ENST00000614509 607 ntBASIC18.57■□□□□ 0.56
VCPP55072 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCPP55072 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.57■□□□□ 0.56
VCPP55072 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.57■□□□□ 0.56
VCPP55072 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms