Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 SIGLEC30P-201ENST00000455569 941 ntBASIC17.53■□□□□ 0.4
HLA-DPA1P20036 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 AC106795.1-205ENST00000512851 1056 ntBASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 CLEC4GP1-201ENST00000596555 870 ntBASIC17.53■□□□□ 0.4
HLA-DPA1P20036 AC073592.4-201ENST00000623827 446 ntBASIC17.53■□□□□ 0.4
HLA-DPA1P20036 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 AP005117.1-201ENST00000584346 1413 ntBASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DPA1P20036 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 RBM17P3-201ENST00000417687 1192 ntBASIC17.52■□□□□ 0.4
HLA-DPA1P20036 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AC091304.2-201ENST00000564639 760 ntBASIC17.52■□□□□ 0.4
HLA-DPA1P20036 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AP001269.4-201ENST00000609611 512 ntBASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AL732292.2-201ENST00000609649 430 ntBASIC17.52■□□□□ 0.4
HLA-DPA1P20036 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HLA-DPA1P20036 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.52■□□□□ 0.39
HLA-DPA1P20036 AL135999.2-201ENST00000622438 1686 ntBASIC17.52■□□□□ 0.39
HLA-DPA1P20036 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.51■□□□□ 0.39
HLA-DPA1P20036 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 AC079776.2-201ENST00000641154 1609 ntBASIC17.51■□□□□ 0.39
HLA-DPA1P20036 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DPA1P20036 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms