Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGA1P17096 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGA1P17096 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGA1P17096 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGA1P17096 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 AC068137.2-201ENST00000605408 478 ntBASIC17.88■□□□□ 0.45
HMGA1P17096 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HMGA1P17096 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGA1P17096 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGA1P17096 ACTG1P14-201ENST00000446382 1122 ntBASIC17.87■□□□□ 0.45
HMGA1P17096 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.87■□□□□ 0.45
HMGA1P17096 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
HMGA1P17096 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HMGA1P17096 SNHG9-202ENST00000564014 471 ntBASIC17.87■□□□□ 0.45
HMGA1P17096 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
HMGA1P17096 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGA1P17096 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGA1P17096 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGA1P17096 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGA1P17096 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
HMGA1P17096 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGA1P17096 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HMGA1P17096 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGA1P17096 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGA1P17096 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGA1P17096 CNN2P11-201ENST00000429351 262 ntBASIC17.86■□□□□ 0.45
HMGA1P17096 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGA1P17096 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGA1P17096 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGA1P17096 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGA1P17096 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGA1P17096 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGA1P17096 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGA1P17096 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HMGA1P17096 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
HMGA1P17096 AC020763.4-201ENST00000623414 4170 ntBASIC17.85■□□□□ 0.45
HMGA1P17096 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms