Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LYSMD4-203ENST00000378904 2122 ntBASIC14.81□□□□□ -0.04
SDCBPO00560 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CICP6-201ENST00000457191 2729 ntBASIC14.8□□□□□ -0.04
SDCBPO00560 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.8□□□□□ -0.04
SDCBPO00560 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
SDCBPO00560 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 AC092597.1-201ENST00000487352 616 ntBASIC14.8□□□□□ -0.04
SDCBPO00560 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
SDCBPO00560 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.8□□□□□ -0.04
SDCBPO00560 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.8□□□□□ -0.04
SDCBPO00560 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SDCBPO00560 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SDCBPO00560 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDCBPO00560 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
SDCBPO00560 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SDCBPO00560 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms