Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 REXO1L11P-201ENST00000620964 1927 ntBASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AL512638.1-201ENST00000457493 794 ntBASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AL139327.4-201ENST00000612362 153 ntBASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AC084121.4-201ENST00000641598 221 ntBASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 AF228730.8-201ENST00000642140 221 ntBASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RTCBQ9Y3I0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 AL009183.1-201ENST00000603760 355 ntBASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RTCBQ9Y3I0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTCBQ9Y3I0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
RTCBQ9Y3I0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 AC097493.3-201ENST00000509725 367 ntBASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 AC069120.2-201ENST00000524091 540 ntBASIC21.7■■□□□ 1.06
RTCBQ9Y3I0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms