Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC125634.1-201ENST00000438758 1403 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 AC092068.3-201ENST00000587894 2016 ntBASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 LINC01023-201ENST00000606054 436 ntBASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 AC124864.1-201ENST00000623408 392 ntBASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ATG4AQ8WYN0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 GUSBP12-201ENST00000513727 720 ntBASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 RN7SL850P-201ENST00000579959 291 ntBASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
ATG4AQ8WYN0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 AC092171.3-201ENST00000610122 2651 ntBASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
ATG4AQ8WYN0 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 AL049757.1-201ENST00000616842 1596 ntBASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 IGHV3-52-201ENST00000519770 353 ntBASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 AL138831.2-201ENST00000606564 490 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms