Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 LINC01311-201ENST00000565162 1445 ntBASIC12.34□□□□□ -0.43
RPL39P62891 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.34□□□□□ -0.43
RPL39P62891 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RPL39P62891 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.34□□□□□ -0.43
RPL39P62891 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.34□□□□□ -0.43
RPL39P62891 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
RPL39P62891 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
RPL39P62891 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
RPL39P62891 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
RPL39P62891 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 AC078925.2-201ENST00000624013 1973 ntBASIC12.33□□□□□ -0.44
RPL39P62891 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 SLC25A1P2-201ENST00000430693 912 ntBASIC12.33□□□□□ -0.44
RPL39P62891 SEC1P-202ENST00000473944 940 ntBASIC12.33□□□□□ -0.44
RPL39P62891 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC12.33□□□□□ -0.44
RPL39P62891 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.33□□□□□ -0.44
RPL39P62891 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 AC026691.1-201ENST00000602502 2017 ntBASIC12.33□□□□□ -0.44
RPL39P62891 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
RPL39P62891 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.33□□□□□ -0.44
RPL39P62891 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RPL39P62891 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPL39P62891 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.32□□□□□ -0.44
RPL39P62891 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.32□□□□□ -0.44
RPL39P62891 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RPL39P62891 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 LINC02012-201ENST00000608206 1725 ntBASIC12.32□□□□□ -0.44
RPL39P62891 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.32□□□□□ -0.44
RPL39P62891 PHB2-202ENST00000440277 996 ntTSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.32□□□□□ -0.44
RPL39P62891 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC12.32□□□□□ -0.44
RPL39P62891 AP005242.2-201ENST00000580065 1175 ntBASIC12.32□□□□□ -0.44
RPL39P62891 AC024243.1-201ENST00000609234 778 ntBASIC12.32□□□□□ -0.44
RPL39P62891 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.32□□□□□ -0.44
RPL39P62891 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
RPL39P62891 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPL39P62891 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPL39P62891 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms