Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.51■□□□□ 0.39
CCNFP41002 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 AC005915.1-201ENST00000624912 2018 ntBASIC17.51■□□□□ 0.39
CCNFP41002 AL358472.4-201ENST00000633140 710 ntBASIC17.51■□□□□ 0.39
CCNFP41002 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 PCDHA14-201ENST00000506751 2298 ntBASIC17.51■□□□□ 0.39
CCNFP41002 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNFP41002 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CCNFP41002 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 PCDH8P1-201ENST00000428983 2773 ntBASIC17.51■□□□□ 0.39
CCNFP41002 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNFP41002 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCNFP41002 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNFP41002 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNFP41002 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 CHCHD2P8-201ENST00000429873 447 ntBASIC17.5■□□□□ 0.39
CCNFP41002 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNFP41002 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.5■□□□□ 0.39
CCNFP41002 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.5■□□□□ 0.39
CCNFP41002 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNFP41002 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCNFP41002 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNFP41002 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.5■□□□□ 0.39
CCNFP41002 UBALD1-205ENST00000590891 2641 ntBASIC17.5■□□□□ 0.39
CCNFP41002 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.49■□□□□ 0.39
CCNFP41002 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 AC068418.2-201ENST00000577309 3703 ntBASIC17.49■□□□□ 0.39
CCNFP41002 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.49■□□□□ 0.39
CCNFP41002 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CCNFP41002 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCNFP41002 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.49■□□□□ 0.39
CCNFP41002 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.49■□□□□ 0.39
CCNFP41002 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCNFP41002 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.49■□□□□ 0.39
CCNFP41002 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.49■□□□□ 0.39
CCNFP41002 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCNFP41002 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 AC068472.1-201ENST00000474589 881 ntBASIC17.49■□□□□ 0.39
CCNFP41002 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.49■□□□□ 0.39
CCNFP41002 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.49■□□□□ 0.39
CCNFP41002 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.49■□□□□ 0.39
CCNFP41002 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNFP41002 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCNFP41002 IGHV3-41-201ENST00000613121 348 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms