Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 RNF216P1-203ENST00000404404 2427 ntBASIC19.9■□□□□ 0.78
USP28Q96RU2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
USP28Q96RU2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 CHCHD2P8-201ENST00000429873 447 ntBASIC19.9■□□□□ 0.78
USP28Q96RU2 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.9■□□□□ 0.78
USP28Q96RU2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USP28Q96RU2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
USP28Q96RU2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.89■□□□□ 0.78
USP28Q96RU2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
USP28Q96RU2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
USP28Q96RU2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.89■□□□□ 0.77
USP28Q96RU2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.89■□□□□ 0.77
USP28Q96RU2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP28Q96RU2 AC111152.3-201ENST00000569699 673 ntBASIC19.89■□□□□ 0.77
USP28Q96RU2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.89■□□□□ 0.77
USP28Q96RU2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.89■□□□□ 0.77
USP28Q96RU2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 AL121672.3-201ENST00000608644 468 ntBASIC19.89■□□□□ 0.77
USP28Q96RU2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.89■□□□□ 0.77
USP28Q96RU2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP28Q96RU2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USP28Q96RU2 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.89■□□□□ 0.77
USP28Q96RU2 PCDHA14-201ENST00000506751 2298 ntBASIC19.88■□□□□ 0.77
USP28Q96RU2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.88■□□□□ 0.77
USP28Q96RU2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 AC132938.5-201ENST00000624980 1813 ntBASIC19.88■□□□□ 0.77
USP28Q96RU2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.88■□□□□ 0.77
USP28Q96RU2 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.88■□□□□ 0.77
USP28Q96RU2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 TNRC18P3-201ENST00000441896 2691 ntBASIC19.88■□□□□ 0.77
USP28Q96RU2 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.88■□□□□ 0.77
USP28Q96RU2 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 BX276092.5-203ENST00000456199 560 ntBASIC19.88■□□□□ 0.77
USP28Q96RU2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.88■□□□□ 0.77
USP28Q96RU2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.88■□□□□ 0.77
USP28Q96RU2 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.88■□□□□ 0.77
USP28Q96RU2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP28Q96RU2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USP28Q96RU2 AL135999.2-201ENST00000622438 1686 ntBASIC19.87■□□□□ 0.77
USP28Q96RU2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.87■□□□□ 0.77
USP28Q96RU2 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.87■□□□□ 0.77
USP28Q96RU2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
USP28Q96RU2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms