Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.98■□□□□ 0.31
TNFP01375 AC010327.4-202ENST00000591484 748 ntBASIC16.98■□□□□ 0.31
TNFP01375 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TNFP01375 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.98■□□□□ 0.31
TNFP01375 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.98■□□□□ 0.31
TNFP01375 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TNFP01375 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.98■□□□□ 0.31
TNFP01375 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TNFP01375 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.97■□□□□ 0.31
TNFP01375 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.97■□□□□ 0.31
TNFP01375 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.97■□□□□ 0.31
TNFP01375 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.97■□□□□ 0.31
TNFP01375 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 LINC00304-203ENST00000565008 1864 ntBASIC16.97■□□□□ 0.31
TNFP01375 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TNFP01375 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
TNFP01375 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.97■□□□□ 0.31
TNFP01375 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.96■□□□□ 0.31
TNFP01375 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.96■□□□□ 0.31
TNFP01375 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.96■□□□□ 0.31
TNFP01375 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 RPSAP43-201ENST00000402237 625 ntBASIC16.96■□□□□ 0.31
TNFP01375 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.96■□□□□ 0.31
TNFP01375 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.96■□□□□ 0.31
TNFP01375 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.96■□□□□ 0.31
TNFP01375 AC112482.1-201ENST00000492080 688 ntBASIC16.96■□□□□ 0.31
TNFP01375 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.96■□□□□ 0.31
TNFP01375 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.96■□□□□ 0.31
TNFP01375 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TNFP01375 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TNFP01375 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
TNFP01375 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TNFP01375 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.96■□□□□ 0.3
TNFP01375 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TNFP01375 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TNFP01375 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.96■□□□□ 0.3
TNFP01375 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
TNFP01375 AC012317.2-201ENST00000623305 2251 ntBASIC16.95■□□□□ 0.3
TNFP01375 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.95■□□□□ 0.3
TNFP01375 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.95■□□□□ 0.3
TNFP01375 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 GPX1P2-201ENST00000429271 606 ntBASIC16.95■□□□□ 0.3
TNFP01375 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.95■□□□□ 0.3
TNFP01375 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.95■□□□□ 0.3
TNFP01375 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.95■□□□□ 0.3
TNFP01375 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.95■□□□□ 0.3
TNFP01375 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.95■□□□□ 0.3
TNFP01375 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms