Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 HMGA1P7-201ENST00000406908 502 ntBASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 RN7SL692P-201ENST00000464677 288 ntBASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM43Q96BQ3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM43Q96BQ3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.77■□□□□ 0.59
TRIM43Q96BQ3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM43Q96BQ3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.77■□□□□ 0.59
TRIM43Q96BQ3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM43Q96BQ3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 AC022494.1-201ENST00000466044 728 ntBASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 ALG1L8P-201ENST00000533887 760 ntBASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 AC093677.2-201ENST00000600169 1863 ntBASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRIM43Q96BQ3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AC241585.1-201ENST00000433527 519 ntBASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AC046185.3-201ENST00000623228 1824 ntBASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM43Q96BQ3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM43Q96BQ3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms