Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDHGA3Q9Y5H0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA3Q9Y5H0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.02■□□□□ 0.32
PCDHGA3Q9Y5H0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA3Q9Y5H0 HLA-J-201ENST00000462773 1622 ntBASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 SIRPAP1-201ENST00000448467 1770 ntBASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.02■□□□□ 0.31
PCDHGA3Q9Y5H0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 AC092865.5-201ENST00000545435 363 ntBASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 AC099343.3-201ENST00000605834 2503 ntBASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA3Q9Y5H0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 AC097374.2-201ENST00000618617 1306 ntBASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 BX842568.4-201ENST00000421222 227 ntBASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 RPS2P1-201ENST00000434010 821 ntBASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
PCDHGA3Q9Y5H0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
PCDHGA3Q9Y5H0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms