Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 AP001094.4-201ENST00000579008 2176 ntBASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 MIR1233-2-201ENST00000408138 82 ntBASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 MIR1233-1-201ENST00000408722 82 ntBASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHROOM3Q8TF72 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 LTB4R2-202ENST00000528054 3092 ntBASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 AL135999.2-201ENST00000622438 1686 ntBASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHROOM3Q8TF72 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 LINC02084-201ENST00000606069 1096 ntBASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 AP001269.4-201ENST00000609611 512 ntBASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHROOM3Q8TF72 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms