Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SZRD1-202ENST00000401089 3447 ntTSL 2 BASIC10.52□□□□□ -0.736e-6■□□□□ 9
DDX55Q8NHQ9 ERGIC3-218ENST00000489071 582 ntTSL 210.45□□□□□ -0.744e-11■□□□□ 9
DDX55Q8NHQ9 ERGIC3-214ENST00000482338 598 ntTSL 210.19□□□□□ -0.784e-11■□□□□ 9
DDX55Q8NHQ9 SZRD1-210ENST00000492354 3401 ntTSL 1 (best) BASIC10.18□□□□□ -0.786e-6■□□□□ 9
DDX55Q8NHQ9 BCAP31-205ENST00000430088 570 ntTSL 210.04□□□□□ -0.86e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC9.66□□□□□ -0.866e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-218ENST00000584657 576 ntTSL 28.83□□□□□ -16e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-212ENST00000559937 579 ntTSL 48.72□□□□□ -1.016e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC8.52□□□□□ -1.056e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-210ENST00000526307 4134 ntTSL 27.88□□□□□ -1.156e-6■□□□□ 9
DDX55Q8NHQ9 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.176e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-206ENST00000478042 2175 ntTSL 57.16□□□□□ -1.266e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC7□□□□□ -1.296e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-209ENST00000558894 797 ntTSL 56.94□□□□□ -1.36e-6■□□□□ 9
DDX55Q8NHQ9 BIRC6-209ENST00000471232 4226 ntTSL 26.78□□□□□ -1.326e-6■□□□□ 9
DDX55Q8NHQ9 DCTN1-222ENST00000492717 371 ntTSL 26.6□□□□□ -1.356e-6■□□□□ 9
DDX55Q8NHQ9 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.46e-6■□□□□ 9
DDX55Q8NHQ9 BRD2-210ENST00000481259 667 ntTSL 36.13□□□□□ -1.436e-6■□□□□ 9
DDX55Q8NHQ9 C11orf58-210ENST00000531658 4258 ntTSL 1 (best)5.12□□□□□ -1.596e-6■□□□□ 9
DDX55Q8NHQ9 C11orf58-203ENST00000524461 2040 ntTSL 24.82□□□□□ -1.646e-6■□□□□ 9
DDX55Q8NHQ9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.666e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-203ENST00000467362 5300 ntTSL 23.66□□□□□ -1.826e-6■□□□□ 9
DDX55Q8NHQ9 AHSG-202ENST00000411641 1711 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.441e-323■□□□□ 9
DDX55Q8NHQ9 AHSG-201ENST00000273784 1553 ntAPPRIS ALT2 TSL 3 BASIC11.96□□□□□ -0.51e-323■□□□□ 9
DDX55Q8NHQ9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.72■■■□□ 2.352e-13■□□□□ 9
DDX55Q8NHQ9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.522e-13■□□□□ 9
DDX55Q8NHQ9 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.032e-13■□□□□ 9
DDX55Q8NHQ9 XPO7-202ENST00000433566 4519 ntTSL 5 BASIC11.81□□□□□ -0.522e-13■□□□□ 9
DDX55Q8NHQ9 ATP6V0D1-211ENST00000565835 905 ntTSL 321.74■■□□□ 1.079e-8■□□□□ 8.9
DDX55Q8NHQ9 ATP6V0D1-202ENST00000426604 1257 ntTSL 213.74□□□□□ -0.219e-8■□□□□ 8.9
DDX55Q8NHQ9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.43■□□□□ 0.382e-31■□□□□ 8.9
DDX55Q8NHQ9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.232e-31■□□□□ 8.9
DDX55Q8NHQ9 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.53e-9■□□□□ 8.9
DDX55Q8NHQ9 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.375e-23■□□□□ 8.9
DDX55Q8NHQ9 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.033e-9■□□□□ 8.9
DDX55Q8NHQ9 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.14■□□□□ 0.015e-23■□□□□ 8.9
DDX55Q8NHQ9 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.522e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.78■□□□□ 0.442e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.262e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.92■□□□□ 0.142e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC15.19■□□□□ 0.022e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-216ENST00000479868 2374 ntTSL 1 (best)14.16□□□□□ -0.142e-11■□□□□ 8.9
DDX55Q8NHQ9 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.762e-11■□□□□ 8.9
DDX55Q8NHQ9 SEC13-219ENST00000492602 393 ntTSL 37.12□□□□□ -1.272e-11■□□□□ 8.9
DDX55Q8NHQ9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.291e-6■□□□□ 8.9
DDX55Q8NHQ9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.75■□□□□ 0.111e-6■□□□□ 8.9
DDX55Q8NHQ9 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.471e-6■□□□□ 8.9
DDX55Q8NHQ9 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.41□□□□□ -1.541e-6■□□□□ 8.9
DDX55Q8NHQ9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.832e-54■□□□□ 8.9
DDX55Q8NHQ9 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.512e-54■□□□□ 8.9
DDX55Q8NHQ9 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.032e-54■□□□□ 8.9
DDX55Q8NHQ9 CLIC1-207ENST00000375780 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.12e-54■□□□□ 8.9
DDX55Q8NHQ9 CLIC1-210ENST00000616760 1098 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.52e-54■□□□□ 8.9
DDX55Q8NHQ9 MIF-203ENST00000498385 435 ntTSL 224.47■■□□□ 1.513e-23■□□□□ 8.9
DDX55Q8NHQ9 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.634e-12■□□□□ 8.9
DDX55Q8NHQ9 BUD31-204ENST00000431419 608 ntTSL 318.11■□□□□ 0.494e-12■□□□□ 8.9
DDX55Q8NHQ9 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.444e-12■□□□□ 8.9
DDX55Q8NHQ9 BUD31-205ENST00000456893 512 ntTSL 5 BASIC17.27■□□□□ 0.364e-12■□□□□ 8.9
DDX55Q8NHQ9 BUD31-206ENST00000466798 820 ntTSL 212.07□□□□□ -0.484e-12■□□□□ 8.9
DDX55Q8NHQ9 CASC3-209ENST00000583902 557 ntTSL 210.7□□□□□ -0.74e-12■□□□□ 8.9
DDX55Q8NHQ9 BUD31-209ENST00000496696 585 ntTSL 25.01□□□□□ -1.614e-12■□□□□ 8.9
DDX55Q8NHQ9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.046e-16■□□□□ 8.9
DDX55Q8NHQ9 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC13.89□□□□□ -0.196e-16■□□□□ 8.9
DDX55Q8NHQ9 TTYH3-203ENST00000403167 4263 ntTSL 5 BASIC13.41□□□□□ -0.266e-16■□□□□ 8.9
DDX55Q8NHQ9 APOE-204ENST00000446996 737 ntTSL 226.46■■□□□ 1.832e-31■□□□□ 8.9
DDX55Q8NHQ9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.99■■□□□ 1.113e-12■□□□□ 8.9
DDX55Q8NHQ9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.883e-12■□□□□ 8.9
DDX55Q8NHQ9 FAM162A-203ENST00000477892 3052 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.663e-12■□□□□ 8.9
DDX55Q8NHQ9 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC7.71□□□□□ -1.183e-12■□□□□ 8.9
DDX55Q8NHQ9 CPSF1-205ENST00000531042 580 ntTSL 519.65■□□□□ 0.746e-8■□□□□ 8.9
DDX55Q8NHQ9 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.366e-8■□□□□ 8.9
DDX55Q8NHQ9 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.036e-8■□□□□ 8.9
DDX55Q8NHQ9 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC14.16□□□□□ -0.142e-18■□□□□ 8.9
DDX55Q8NHQ9 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC11.95□□□□□ -0.52e-18■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.318e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.318e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.29■■□□□ 1.968e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-220ENST00000488119 1121 ntTSL 227.15■■□□□ 1.948e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.668e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-214ENST00000416410 887 ntTSL 224.61■■□□□ 1.538e-11■□□□□ 8.9
DDX55Q8NHQ9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.358e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-215ENST00000436437 882 ntTSL 323.4■■□□□ 1.348e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-218ENST00000480913 937 ntTSL 523.32■■□□□ 1.328e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-217ENST00000469963 1682 ntTSL 523.24■■□□□ 1.318e-11■□□□□ 8.9
DDX55Q8NHQ9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.278e-11■□□□□ 8.9
DDX55Q8NHQ9 LUC7L2-203ENST00000435096 570 ntTSL 322.47■■□□□ 1.198e-11■□□□□ 8.9
DDX55Q8NHQ9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.171e-6■□□□□ 8.9
DDX55Q8NHQ9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.79■■□□□ 1.088e-11■□□□□ 8.9
DDX55Q8NHQ9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.068e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.858e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-203ENST00000558040 774 ntTSL 519.64■□□□□ 0.738e-11■□□□□ 8.9
DDX55Q8NHQ9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.721e-6■□□□□ 8.9
DDX55Q8NHQ9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.21■□□□□ 0.678e-11■□□□□ 8.9
DDX55Q8NHQ9 ATAD3A-201ENST00000339113 2330 ntTSL 219.12■□□□□ 0.658e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.04■□□□□ 0.648e-11■□□□□ 8.9
DDX55Q8NHQ9 LUC7L2-209ENST00000608368 551 ntTSL 418.03■□□□□ 0.488e-11■□□□□ 8.9
DDX55Q8NHQ9 MPZ-201ENST00000463290 1693 ntTSL 1 (best)16.91■□□□□ 0.38e-11■□□□□ 8.9
DDX55Q8NHQ9 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC16.6■□□□□ 0.258e-11■□□□□ 8.9
DDX55Q8NHQ9 STK11-207ENST00000589152 3365 ntTSL 216.45■□□□□ 0.221e-6■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.6■□□□□ 0.098e-11■□□□□ 8.9
Retrieved 100 of 15,504 protein–RNA pairs in 72 ms