Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 AC046185.3-201ENST00000623228 1824 ntBASIC17.09■□□□□ 0.33
SIX3O95343 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 AC124067.4-201ENST00000519691 2379 ntBASIC17.09■□□□□ 0.33
SIX3O95343 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.08■□□□□ 0.33
SIX3O95343 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.08■□□□□ 0.33
SIX3O95343 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.08■□□□□ 0.33
SIX3O95343 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.08■□□□□ 0.33
SIX3O95343 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
SIX3O95343 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX3O95343 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.08■□□□□ 0.33
SIX3O95343 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.08■□□□□ 0.32
SIX3O95343 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SIX3O95343 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
SIX3O95343 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SIX3O95343 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 SLC25A1P3-201ENST00000395415 828 ntBASIC17.08■□□□□ 0.32
SIX3O95343 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX3O95343 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.08■□□□□ 0.32
SIX3O95343 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.08■□□□□ 0.32
SIX3O95343 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX3O95343 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
SIX3O95343 LINC01238-205ENST00000567549 1107 ntBASIC17.08■□□□□ 0.32
SIX3O95343 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX3O95343 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
SIX3O95343 AC109462.3-201ENST00000573934 613 ntBASIC17.08■□□□□ 0.32
SIX3O95343 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.08■□□□□ 0.32
SIX3O95343 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX3O95343 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SIX3O95343 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.08■□□□□ 0.32
SIX3O95343 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX3O95343 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SIX3O95343 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SIX3O95343 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.07■□□□□ 0.32
SIX3O95343 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.07■□□□□ 0.32
SIX3O95343 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.07■□□□□ 0.32
SIX3O95343 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 AL353801.3-201ENST00000609898 542 ntBASIC17.07■□□□□ 0.32
SIX3O95343 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX3O95343 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX3O95343 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SIX3O95343 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms