Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
SLC28A1O00337 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SLC28A1O00337 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
SLC28A1O00337 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SLC28A1O00337 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SLC28A1O00337 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.83■□□□□ 0.28
SLC28A1O00337 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.83■□□□□ 0.28
SLC28A1O00337 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 AL645929.1-201ENST00000420084 975 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 AC104076.2-201ENST00000448912 469 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.83■□□□□ 0.28
SLC28A1O00337 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 LINC01238-205ENST00000567549 1107 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 AC109462.3-201ENST00000573934 613 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SLC28A1O00337 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 AC019129.2-201ENST00000609837 1235 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.83■□□□□ 0.28
SLC28A1O00337 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SLC28A1O00337 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SLC28A1O00337 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.82■□□□□ 0.28
SLC28A1O00337 LINC02012-201ENST00000608206 1725 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 AC093525.9-201ENST00000624961 1746 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.82■□□□□ 0.28
SLC28A1O00337 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 AC099398.1-201ENST00000567919 2776 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 AL671277.2-201ENST00000458060 996 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 RN7SL606P-201ENST00000472779 293 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.82■□□□□ 0.28
SLC28A1O00337 AC122714.2-201ENST00000502787 707 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.82■□□□□ 0.28
SLC28A1O00337 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SLC28A1O00337 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.82■□□□□ 0.28
SLC28A1O00337 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SLC28A1O00337 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SLC28A1O00337 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 AC084018.2-201ENST00000613093 2607 ntBASIC16.82■□□□□ 0.28
SLC28A1O00337 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.82■□□□□ 0.28
SLC28A1O00337 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SLC28A1O00337 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 AC125634.1-201ENST00000438758 1403 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SLC28A1O00337 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 AC060834.1-201ENST00000443027 2032 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 TSPY22P-201ENST00000427496 604 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SLC28A1O00337 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
SLC28A1O00337 AC022616.7-201ENST00000525383 220 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SLC28A1O00337 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 AC111152.3-201ENST00000569699 673 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.81■□□□□ 0.28
SLC28A1O00337 AC124864.1-201ENST00000623408 392 ntBASIC16.81■□□□□ 0.28
SLC28A1O00337 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SLC28A1O00337 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SLC28A1O00337 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms