Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CX3CR1P49238 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CR1P49238 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CX3CR1P49238 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CX3CR1P49238 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CX3CR1P49238 TMPOP1-202ENST00000424642 1267 ntBASIC15.41■□□□□ 0.06
CX3CR1P49238 AC005104.2-201ENST00000427818 678 ntBASIC15.41■□□□□ 0.06
CX3CR1P49238 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CX3CR1P49238 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.41■□□□□ 0.06
CX3CR1P49238 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.41■□□□□ 0.06
CX3CR1P49238 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.41■□□□□ 0.06
CX3CR1P49238 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CR1P49238 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CR1P49238 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CR1P49238 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CR1P49238 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CR1P49238 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CX3CR1P49238 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CR1P49238 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CX3CR1P49238 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.4■□□□□ 0.06
CX3CR1P49238 AC096633.1-201ENST00000422446 749 ntBASIC15.4■□□□□ 0.06
CX3CR1P49238 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 GUSBP12-201ENST00000513727 720 ntBASIC15.4■□□□□ 0.06
CX3CR1P49238 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.4■□□□□ 0.06
CX3CR1P49238 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CR1P49238 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CR1P49238 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CX3CR1P49238 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CR1P49238 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 AP001094.4-201ENST00000579008 2176 ntBASIC15.39■□□□□ 0.05
CX3CR1P49238 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CX3CR1P49238 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 LYSMD4-203ENST00000378904 2122 ntBASIC15.39■□□□□ 0.05
CX3CR1P49238 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CR1P49238 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.39■□□□□ 0.05
CX3CR1P49238 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CR1P49238 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CR1P49238 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms