Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14.31□□□□□ -0.12
SSSCA1O60232 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC008687.5-201ENST00000593746 558 ntBASIC14.31□□□□□ -0.12
SSSCA1O60232 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC010240.3-201ENST00000607688 395 ntBASIC14.31□□□□□ -0.12
SSSCA1O60232 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.31□□□□□ -0.12
SSSCA1O60232 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.31□□□□□ -0.12
SSSCA1O60232 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.31□□□□□ -0.12
SSSCA1O60232 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SSSCA1O60232 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.3□□□□□ -0.12
SSSCA1O60232 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.3□□□□□ -0.12
SSSCA1O60232 CRYGFP-201ENST00000418459 633 ntBASIC14.3□□□□□ -0.12
SSSCA1O60232 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC14.3□□□□□ -0.12
SSSCA1O60232 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 WWOX-216ENST00000569818 525 ntBASIC14.3□□□□□ -0.12
SSSCA1O60232 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 PCDHA1-201ENST00000378133 2726 ntBASIC14.3□□□□□ -0.12
SSSCA1O60232 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 LYSMD4-203ENST00000378904 2122 ntBASIC14.3□□□□□ -0.12
SSSCA1O60232 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.3□□□□□ -0.12
SSSCA1O60232 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SSSCA1O60232 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
SSSCA1O60232 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SSSCA1O60232 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
SSSCA1O60232 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.29□□□□□ -0.12
SSSCA1O60232 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SSSCA1O60232 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
SSSCA1O60232 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC14.29□□□□□ -0.12
SSSCA1O60232 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC14.29□□□□□ -0.12
SSSCA1O60232 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.29□□□□□ -0.12
SSSCA1O60232 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SSSCA1O60232 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms