Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.56■■□□□ 1.36
PCDHGA3Q9Y5H0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.55■■□□□ 1.36
PCDHGA3Q9Y5H0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PCDHGA3Q9Y5H0 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.55■■□□□ 1.36
PCDHGA3Q9Y5H0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA3Q9Y5H0 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
PCDHGA3Q9Y5H0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.54■■□□□ 1.36
PCDHGA3Q9Y5H0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHGA3Q9Y5H0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.53■■□□□ 1.36
PCDHGA3Q9Y5H0 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 SPCS2P3-201ENST00000500401 656 ntBASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.52■■□□□ 1.36
PCDHGA3Q9Y5H0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA3Q9Y5H0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHGA3Q9Y5H0 MIR6765-201ENST00000614092 87 ntBASIC23.5■■□□□ 1.35
PCDHGA3Q9Y5H0 AL035685.1-201ENST00000636663 812 ntBASIC23.5■■□□□ 1.35
PCDHGA3Q9Y5H0 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHGA3Q9Y5H0 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHGA3Q9Y5H0 BHLHE23-202ENST00000612929 1109 ntBASIC23.49■■□□□ 1.35
PCDHGA3Q9Y5H0 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHGA3Q9Y5H0 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHGA3Q9Y5H0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 AL451085.2-201ENST00000605085 799 ntBASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA3Q9Y5H0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHGA3Q9Y5H0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
PCDHGA3Q9Y5H0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
PCDHGA3Q9Y5H0 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.47■■□□□ 1.35
PCDHGA3Q9Y5H0 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 AC018755.3-202ENST00000596210 929 ntBASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.46■■□□□ 1.35
PCDHGA3Q9Y5H0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 AC010980.1-201ENST00000587192 1142 ntBASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA3Q9Y5H0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHGA3Q9Y5H0 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 AC139795.1-202ENST00000500444 432 ntBASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.43■■□□□ 1.34
PCDHGA3Q9Y5H0 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA3Q9Y5H0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.41■■□□□ 1.34
PCDHGA3Q9Y5H0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHGA3Q9Y5H0 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.4■■□□□ 1.34
PCDHGA3Q9Y5H0 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHGA3Q9Y5H0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.4■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms