Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 AC133552.2-201ENST00000619106 1032 ntBASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD1Q96NR3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 AC026202.3-201ENST00000600805 1127 ntBASIC22.95■■□□□ 1.26
PTCHD1Q96NR3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD1Q96NR3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD1Q96NR3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.93■■□□□ 1.26
PTCHD1Q96NR3 AC009831.1-201ENST00000580420 1582 ntBASIC22.93■■□□□ 1.26
PTCHD1Q96NR3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD1Q96NR3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD1Q96NR3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
PTCHD1Q96NR3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD1Q96NR3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD1Q96NR3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.91■■□□□ 1.26
PTCHD1Q96NR3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.91■■□□□ 1.26
PTCHD1Q96NR3 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.91■■□□□ 1.26
PTCHD1Q96NR3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD1Q96NR3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
PTCHD1Q96NR3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PTCHD1Q96NR3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.26
PTCHD1Q96NR3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.89■■□□□ 1.26
PTCHD1Q96NR3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.89■■□□□ 1.26
PTCHD1Q96NR3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.89■■□□□ 1.25
PTCHD1Q96NR3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.89■■□□□ 1.25
PTCHD1Q96NR3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 AL592293.1-201ENST00000502889 1188 ntBASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 RAP2CP1-202ENST00000605179 643 ntBASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.88■■□□□ 1.25
PTCHD1Q96NR3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 KRT18P60-201ENST00000312876 1297 ntBASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD1Q96NR3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
PTCHD1Q96NR3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.86■■□□□ 1.25
PTCHD1Q96NR3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PTCHD1Q96NR3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD1Q96NR3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD1Q96NR3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD1Q96NR3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD1Q96NR3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD1Q96NR3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD1Q96NR3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
PTCHD1Q96NR3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD1Q96NR3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.83■■□□□ 1.25
PTCHD1Q96NR3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.83■■□□□ 1.24
PTCHD1Q96NR3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD1Q96NR3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
PTCHD1Q96NR3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 AC012354.3-201ENST00000623734 483 ntBASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.81■■□□□ 1.24
PTCHD1Q96NR3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.8■■□□□ 1.24
PTCHD1Q96NR3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD1Q96NR3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 570.1 ms