Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC018755.3-202ENST00000596210 929 ntBASIC23.41■■□□□ 1.34
COL28A1Q2UY09 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
COL28A1Q2UY09 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
COL28A1Q2UY09 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
COL28A1Q2UY09 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
COL28A1Q2UY09 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
COL28A1Q2UY09 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.39■■□□□ 1.34
COL28A1Q2UY09 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.39■■□□□ 1.33
COL28A1Q2UY09 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL28A1Q2UY09 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL28A1Q2UY09 AL139246.5-201ENST00000606645 996 ntBASIC23.38■■□□□ 1.33
COL28A1Q2UY09 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.38■■□□□ 1.33
COL28A1Q2UY09 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL28A1Q2UY09 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL28A1Q2UY09 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL28A1Q2UY09 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.37■■□□□ 1.33
COL28A1Q2UY09 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
COL28A1Q2UY09 AC092666.2-201ENST00000613287 246 ntBASIC23.37■■□□□ 1.33
COL28A1Q2UY09 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.37■■□□□ 1.33
COL28A1Q2UY09 AC100797.4-201ENST00000631653 1827 ntBASIC23.37■■□□□ 1.33
COL28A1Q2UY09 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.36■■□□□ 1.33
COL28A1Q2UY09 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
COL28A1Q2UY09 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL28A1Q2UY09 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL28A1Q2UY09 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.34■■□□□ 1.33
COL28A1Q2UY09 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.34■■□□□ 1.33
COL28A1Q2UY09 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 AL359258.2-201ENST00000564063 1566 ntBASIC23.33■■□□□ 1.33
COL28A1Q2UY09 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 Z92544.1-202ENST00000571933 1220 ntBASIC23.33■■□□□ 1.33
COL28A1Q2UY09 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.33■■□□□ 1.33
COL28A1Q2UY09 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL28A1Q2UY09 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL28A1Q2UY09 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL28A1Q2UY09 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
COL28A1Q2UY09 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL28A1Q2UY09 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL28A1Q2UY09 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.32■■□□□ 1.32
COL28A1Q2UY09 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL28A1Q2UY09 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL28A1Q2UY09 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL28A1Q2UY09 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL28A1Q2UY09 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.3■■□□□ 1.32
COL28A1Q2UY09 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL28A1Q2UY09 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.28■■□□□ 1.32
COL28A1Q2UY09 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.27■■□□□ 1.32
COL28A1Q2UY09 DRD5P2-201ENST00000421395 2012 ntBASIC23.26■■□□□ 1.31
COL28A1Q2UY09 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms