Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
FOXA3P55318 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
FOXA3P55318 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.16■□□□□ 0.5
FOXA3P55318 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXA3P55318 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXA3P55318 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA3P55318 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXA3P55318 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA3P55318 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA3P55318 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.14■□□□□ 0.49
FOXA3P55318 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA3P55318 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXA3P55318 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.14■□□□□ 0.49
FOXA3P55318 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA3P55318 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA3P55318 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA3P55318 EBPL-202ENST00000378268 680 ntTSL 3 BASIC18.13■□□□□ 0.49
FOXA3P55318 AC022211.4-201ENST00000625094 2161 ntBASIC18.13■□□□□ 0.49
FOXA3P55318 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC18.13■□□□□ 0.49
FOXA3P55318 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA3P55318 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA3P55318 AC012676.1-201ENST00000574705 1949 ntBASIC18.11■□□□□ 0.49
FOXA3P55318 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 AC138932.3-201ENST00000567634 1902 ntBASIC18.11■□□□□ 0.49
FOXA3P55318 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
FOXA3P55318 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA3P55318 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA3P55318 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA3P55318 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.09■□□□□ 0.49
FOXA3P55318 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.09■□□□□ 0.49
FOXA3P55318 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
FOXA3P55318 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA3P55318 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA3P55318 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA3P55318 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA3P55318 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA3P55318 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA3P55318 AL391121.1-201ENST00000607967 1349 ntBASIC18.08■□□□□ 0.49
FOXA3P55318 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXA3P55318 SETD8P1-201ENST00000623146 1180 ntBASIC18.08■□□□□ 0.48
FOXA3P55318 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA3P55318 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA3P55318 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA3P55318 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
FOXA3P55318 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA3P55318 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA3P55318 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA3P55318 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA3P55318 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXA3P55318 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA3P55318 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA3P55318 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA3P55318 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA3P55318 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA3P55318 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA3P55318 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA3P55318 LINC00273-201ENST00000539813 1452 ntBASIC18.07■□□□□ 0.48
FOXA3P55318 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA3P55318 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA3P55318 RARRES2P7-201ENST00000567349 469 ntBASIC18.06■□□□□ 0.48
FOXA3P55318 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA3P55318 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA3P55318 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
FOXA3P55318 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
FOXA3P55318 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
FOXA3P55318 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA3P55318 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.05■□□□□ 0.48
FOXA3P55318 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
FOXA3P55318 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.04■□□□□ 0.48
FOXA3P55318 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
FOXA3P55318 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA3P55318 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms