Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC34.49■■■■□ 3.11
MSH6P52701 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC34.49■■■■□ 3.11
MSH6P52701 AL359504.2-201ENST00000605506 1601 ntBASIC34.49■■■■□ 3.11
MSH6P52701 RPS2P7-201ENST00000447334 885 ntBASIC34.49■■■■□ 3.11
MSH6P52701 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC34.49■■■■□ 3.11
MSH6P52701 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC34.49■■■■□ 3.11
MSH6P52701 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
MSH6P52701 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
MSH6P52701 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
MSH6P52701 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC34.47■■■■□ 3.11
MSH6P52701 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
MSH6P52701 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
MSH6P52701 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC34.46■■■■□ 3.11
MSH6P52701 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC34.46■■■■□ 3.11
MSH6P52701 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC34.46■■■■□ 3.11
MSH6P52701 AC131281.2-201ENST00000520478 145 ntBASIC34.46■■■■□ 3.11
MSH6P52701 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC34.46■■■■□ 3.11
MSH6P52701 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
MSH6P52701 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC34.45■■■■□ 3.11
MSH6P52701 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
MSH6P52701 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC34.45■■■■□ 3.11
MSH6P52701 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC34.45■■■■□ 3.11
MSH6P52701 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC34.45■■■■□ 3.11
MSH6P52701 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC34.45■■■■□ 3.1
MSH6P52701 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
MSH6P52701 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
MSH6P52701 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC34.43■■■■□ 3.1
MSH6P52701 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
MSH6P52701 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC34.43■■■■□ 3.1
MSH6P52701 TRIR-202ENST00000588213 841 ntTSL 3 BASIC34.43■■■■□ 3.1
MSH6P52701 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
MSH6P52701 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC34.42■■■■□ 3.1
MSH6P52701 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
MSH6P52701 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC34.41■■■■□ 3.1
MSH6P52701 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
MSH6P52701 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
MSH6P52701 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
MSH6P52701 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC34.39■■■■□ 3.1
MSH6P52701 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC34.39■■■■□ 3.1
MSH6P52701 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC34.39■■■■□ 3.1
MSH6P52701 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
MSH6P52701 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC34.38■■■■□ 3.09
MSH6P52701 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
MSH6P52701 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC34.38■■■■□ 3.09
MSH6P52701 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
MSH6P52701 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC34.37■■■■□ 3.09
MSH6P52701 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
MSH6P52701 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC34.37■■■■□ 3.09
MSH6P52701 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
MSH6P52701 TSPY9P-201ENST00000440215 945 ntBASIC34.36■■■■□ 3.09
MSH6P52701 TSPY11P-201ENST00000442607 1045 ntBASIC34.36■■■■□ 3.09
MSH6P52701 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC34.36■■■■□ 3.09
MSH6P52701 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
MSH6P52701 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC34.36■■■■□ 3.09
MSH6P52701 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC34.36■■■■□ 3.09
MSH6P52701 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC34.36■■■■□ 3.09
MSH6P52701 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC34.36■■■■□ 3.09
MSH6P52701 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
MSH6P52701 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC34.34■■■■□ 3.09
MSH6P52701 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
MSH6P52701 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC34.34■■■■□ 3.09
MSH6P52701 RPP21-222ENST00000433076 577 ntTSL 2 BASIC34.34■■■■□ 3.09
MSH6P52701 AC022616.5-201ENST00000518796 181 ntBASIC34.34■■■■□ 3.09
MSH6P52701 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC34.34■■■■□ 3.09
MSH6P52701 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC34.33■■■■□ 3.09
MSH6P52701 AL136116.3-201ENST00000402907 1138 ntBASIC34.33■■■■□ 3.09
MSH6P52701 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC34.33■■■■□ 3.09
MSH6P52701 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC34.33■■■■□ 3.09
MSH6P52701 AC110285.6-201ENST00000617652 491 ntBASIC34.33■■■■□ 3.09
MSH6P52701 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
MSH6P52701 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC34.32■■■■□ 3.08
MSH6P52701 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
MSH6P52701 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC34.32■■■■□ 3.08
MSH6P52701 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
MSH6P52701 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
MSH6P52701 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC34.3■■■■□ 3.08
MSH6P52701 SRR-208ENST00000576848 588 ntTSL 4 BASIC34.3■■■■□ 3.08
MSH6P52701 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC34.29■■■■□ 3.08
MSH6P52701 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
MSH6P52701 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC34.29■■■■□ 3.08
MSH6P52701 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
MSH6P52701 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
MSH6P52701 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
MSH6P52701 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC34.28■■■■□ 3.08
MSH6P52701 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
MSH6P52701 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
MSH6P52701 AC137630.3-201ENST00000607245 391 ntBASIC34.28■■■■□ 3.08
MSH6P52701 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
MSH6P52701 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC34.27■■■■□ 3.08
MSH6P52701 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC34.27■■■■□ 3.08
MSH6P52701 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC34.27■■■■□ 3.08
MSH6P52701 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
MSH6P52701 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
MSH6P52701 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC34.26■■■■□ 3.08
MSH6P52701 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms