Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC32.95■■■□□ 2.87
COL18A1P39060 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC32.95■■■□□ 2.87
COL18A1P39060 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
COL18A1P39060 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
COL18A1P39060 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
COL18A1P39060 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC32.94■■■□□ 2.86
COL18A1P39060 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.94■■■□□ 2.86
COL18A1P39060 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC32.93■■■□□ 2.86
COL18A1P39060 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC32.93■■■□□ 2.86
COL18A1P39060 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC32.93■■■□□ 2.86
COL18A1P39060 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
COL18A1P39060 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC32.93■■■□□ 2.86
COL18A1P39060 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC32.93■■■□□ 2.86
COL18A1P39060 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC32.93■■■□□ 2.86
COL18A1P39060 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
COL18A1P39060 TK2-216ENST00000564917 1156 ntTSL 3 BASIC32.92■■■□□ 2.86
COL18A1P39060 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC32.91■■■□□ 2.86
COL18A1P39060 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC32.91■■■□□ 2.86
COL18A1P39060 RNF146-205ENST00000477776 762 ntTSL 3 BASIC32.91■■■□□ 2.86
COL18A1P39060 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC32.91■■■□□ 2.86
COL18A1P39060 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
COL18A1P39060 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
COL18A1P39060 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC32.91■■■□□ 2.86
COL18A1P39060 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC32.9■■■□□ 2.86
COL18A1P39060 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC32.9■■■□□ 2.86
COL18A1P39060 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC32.9■■■□□ 2.86
COL18A1P39060 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.89■■■□□ 2.86
COL18A1P39060 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC32.88■■■□□ 2.85
COL18A1P39060 Z92544.1-202ENST00000571933 1220 ntBASIC32.88■■■□□ 2.85
COL18A1P39060 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
COL18A1P39060 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
COL18A1P39060 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC32.88■■■□□ 2.85
COL18A1P39060 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
COL18A1P39060 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC32.88■■■□□ 2.85
COL18A1P39060 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
COL18A1P39060 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL18A1P39060 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC32.86■■■□□ 2.85
COL18A1P39060 RPS2P7-201ENST00000447334 885 ntBASIC32.86■■■□□ 2.85
COL18A1P39060 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL18A1P39060 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC32.85■■■□□ 2.85
COL18A1P39060 CREM-229ENST00000474362 1030 ntTSL 2 BASIC32.84■■■□□ 2.85
COL18A1P39060 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC32.84■■■□□ 2.85
COL18A1P39060 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC32.84■■■□□ 2.85
COL18A1P39060 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC32.84■■■□□ 2.85
COL18A1P39060 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
COL18A1P39060 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
COL18A1P39060 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC32.83■■■□□ 2.85
COL18A1P39060 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
COL18A1P39060 LSM7-203ENST00000585409 512 ntTSL 2 BASIC32.83■■■□□ 2.85
COL18A1P39060 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC32.83■■■□□ 2.85
COL18A1P39060 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
COL18A1P39060 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
COL18A1P39060 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC32.82■■■□□ 2.84
COL18A1P39060 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
COL18A1P39060 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC32.81■■■□□ 2.84
COL18A1P39060 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC32.81■■■□□ 2.84
COL18A1P39060 AC239859.2-201ENST00000444165 318 ntBASIC32.81■■■□□ 2.84
COL18A1P39060 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
COL18A1P39060 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
COL18A1P39060 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC32.79■■■□□ 2.84
COL18A1P39060 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC32.79■■■□□ 2.84
COL18A1P39060 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
COL18A1P39060 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
COL18A1P39060 PROC-203ENST00000409048 1586 ntTSL 5 BASIC32.78■■■□□ 2.84
COL18A1P39060 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
COL18A1P39060 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
COL18A1P39060 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC32.78■■■□□ 2.84
COL18A1P39060 LONRF2P2-201ENST00000439212 571 ntBASIC32.78■■■□□ 2.84
COL18A1P39060 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC32.78■■■□□ 2.84
COL18A1P39060 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC32.78■■■□□ 2.84
COL18A1P39060 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC32.77■■■□□ 2.84
COL18A1P39060 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC32.77■■■□□ 2.84
COL18A1P39060 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
COL18A1P39060 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC32.76■■■□□ 2.83
COL18A1P39060 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC32.75■■■□□ 2.83
COL18A1P39060 GRAMD4P7-201ENST00000578182 1232 ntBASIC32.75■■■□□ 2.83
COL18A1P39060 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL18A1P39060 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC32.74■■■□□ 2.83
COL18A1P39060 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL18A1P39060 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL18A1P39060 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL18A1P39060 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL18A1P39060 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
COL18A1P39060 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL18A1P39060 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC32.73■■■□□ 2.83
COL18A1P39060 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL18A1P39060 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL18A1P39060 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
COL18A1P39060 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
COL18A1P39060 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC32.73■■■□□ 2.83
COL18A1P39060 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC32.73■■■□□ 2.83
COL18A1P39060 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
COL18A1P39060 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC32.72■■■□□ 2.83
COL18A1P39060 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC32.72■■■□□ 2.83
COL18A1P39060 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms