Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.86■■■□□ 2.21
SHMT1P34896 AC018755.3-202ENST00000596210 929 ntBASIC28.86■■■□□ 2.21
SHMT1P34896 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC28.86■■■□□ 2.21
SHMT1P34896 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SHMT1P34896 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.85■■■□□ 2.21
SHMT1P34896 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.85■■■□□ 2.21
SHMT1P34896 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHMT1P34896 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHMT1P34896 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHMT1P34896 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHMT1P34896 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SHMT1P34896 AC010980.1-201ENST00000587192 1142 ntBASIC28.84■■■□□ 2.21
SHMT1P34896 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.84■■■□□ 2.21
SHMT1P34896 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.83■■■□□ 2.21
SHMT1P34896 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHMT1P34896 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC28.83■■■□□ 2.21
SHMT1P34896 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SHMT1P34896 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
SHMT1P34896 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SHMT1P34896 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.82■■■□□ 2.2
SHMT1P34896 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SHMT1P34896 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.81■■■□□ 2.2
SHMT1P34896 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHMT1P34896 AC142086.6-201ENST00000621154 1765 ntBASIC28.81■■■□□ 2.2
SHMT1P34896 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC28.81■■■□□ 2.2
SHMT1P34896 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.81■■■□□ 2.2
SHMT1P34896 BHLHE23-202ENST00000612929 1109 ntBASIC28.81■■■□□ 2.2
SHMT1P34896 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.81■■■□□ 2.2
SHMT1P34896 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHMT1P34896 PVT1_1.1-201ENST00000615125 194 ntBASIC28.8■■■□□ 2.2
SHMT1P34896 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHMT1P34896 BEX3-202ENST00000372634 753 ntTSL 2 BASIC28.79■■■□□ 2.2
SHMT1P34896 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHMT1P34896 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC28.79■■■□□ 2.2
SHMT1P34896 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SHMT1P34896 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
SHMT1P34896 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHMT1P34896 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SHMT1P34896 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SHMT1P34896 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC28.78■■■□□ 2.2
SHMT1P34896 AC074183.2-201ENST00000623112 922 ntBASIC28.78■■■□□ 2.2
SHMT1P34896 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.78■■■□□ 2.2
SHMT1P34896 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
SHMT1P34896 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC28.77■■■□□ 2.2
SHMT1P34896 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHMT1P34896 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC28.77■■■□□ 2.2
SHMT1P34896 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHMT1P34896 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.76■■■□□ 2.19
SHMT1P34896 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHMT1P34896 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC28.76■■■□□ 2.19
SHMT1P34896 AC139795.1-202ENST00000500444 432 ntBASIC28.76■■■□□ 2.19
SHMT1P34896 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC28.76■■■□□ 2.19
SHMT1P34896 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
SHMT1P34896 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHMT1P34896 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHMT1P34896 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.75■■■□□ 2.19
SHMT1P34896 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.74■■■□□ 2.19
SHMT1P34896 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC28.74■■■□□ 2.19
SHMT1P34896 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.74■■■□□ 2.19
SHMT1P34896 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
SHMT1P34896 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHMT1P34896 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHMT1P34896 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC28.74■■■□□ 2.19
SHMT1P34896 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
SHMT1P34896 AC103834.1-201ENST00000520383 144 ntBASIC28.73■■■□□ 2.19
SHMT1P34896 AC142472.1-201ENST00000612013 1741 ntBASIC28.73■■■□□ 2.19
SHMT1P34896 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHMT1P34896 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
SHMT1P34896 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHMT1P34896 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHMT1P34896 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.72■■■□□ 2.19
SHMT1P34896 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHMT1P34896 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SHMT1P34896 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHMT1P34896 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHMT1P34896 KRT8P33-201ENST00000508125 1423 ntBASIC28.71■■■□□ 2.19
SHMT1P34896 HYI-210ENST00000486909 905 ntTSL 5 BASIC28.71■■■□□ 2.19
SHMT1P34896 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHMT1P34896 AL451085.2-201ENST00000605085 799 ntBASIC28.7■■■□□ 2.18
SHMT1P34896 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.7■■■□□ 2.18
SHMT1P34896 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.69■■■□□ 2.18
SHMT1P34896 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHMT1P34896 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.69■■■□□ 2.18
SHMT1P34896 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHMT1P34896 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHMT1P34896 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHMT1P34896 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHMT1P34896 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.69■■■□□ 2.18
SHMT1P34896 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHMT1P34896 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.68■■■□□ 2.18
SHMT1P34896 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHMT1P34896 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.67■■■□□ 2.18
SHMT1P34896 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHMT1P34896 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC28.67■■■□□ 2.18
SHMT1P34896 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHMT1P34896 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.66■■■□□ 2.18
SHMT1P34896 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.66■■■□□ 2.18
SHMT1P34896 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHMT1P34896 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
SHMT1P34896 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.66■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms